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Report for CCDS49862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49862.1 Public Mus musculus 16 BC016579 23 108 98 CCDS HistoryNCBI Gene:212998Re-query CCDS DB by CCDS ID:49862.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49862.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036732.8 ENSMUSP00000037651.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036732.8Link to Ensembl Protein Viewer:ENSMUSP00000037651.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000036732Re-query CCDS DB by Protein ID:ENSMUSP00000037651
Original member NCBI NM_145389.2 NP_663364.2 Updated not alive Link to Nucleotide Sequence:NM_145389.2Link to Protein Sequence:NP_663364.2Re-query CCDS DB by Nucleotide ID:NM_145389Re-query CCDS DB by Protein ID:NP_663364
Current member NCBI NM_145389.3 NP_663364.2 Accepted alive Link to Nucleotide Sequence:NM_145389.3Link to Protein Sequence:NP_663364.2Re-query CCDS DB by Nucleotide ID:NM_145389Re-query CCDS DB by Protein ID:NP_663364Link to BLAST:NP_663364.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663364.2 218 Q8C5C9 218 99.5413% 0 1

Chromosomal Locations for CCDS 49862.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 45628306 45628310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45629402 45629583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45632981 45633051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45640305 45640432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45648833 45648962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45653901 45654041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGGAAGAAGGGTCCAGATCCCAATCGCCCCGGGAAGAGCTGGAGCTCTCGATGCTGGACGGGCCTCAGG
AAGAGCTGACACCTCTCAACAATGACCTTCGGATCCAGCCTAACTCCGCTGAGGACCCTAGCCCAGCCCA
GGTGGGCAAGGAAAGCCCCTGGAGTCCCTGCAACAAGAGCGTGGTTGGAAAATGTAAACTGTGGATGGTC
ATTGTCACCATATTCTTGTGCTTCATTATAGTGATCGTTATAAGCCTATGCCTTGTAGGAGTGACGTATA
TCGATGAAGATGAAAATGAAATACTCGAATTATCGTCAAACAAAACATTCTTCATCACGCTCAAGATTCC
AGAGGAGTGTGCTAATGAAGAGGAGTTGCATCACTTGCTCACTGAAAGGCTCACGGACACGTATAGACAG
TCCCCATCTCTGAGTCGTTTTTTCACTTCTGCTGATATCTTGGATTTCAGTGTTGAAAATGCCACGGTAA
CCTATCACTTGCAGTTTGGAGTTCCATCTGAAGATGATGACTTTATGAAATACATGATGAGTGAAGAGTT
GGTGCTCGGCATCATGCGACAGAGCTTCCACGATAAGAACATATCTACCTGTGAGAGTCTCGGGCTTGAC
CCAGAATCTCTCTTGCTCTATGAATGA

Translation (218 aa):
MEEGSRSQSPREELELSMLDGPQEELTPLNNDLRIQPNSAEDPSPAQVGKESPWSPCNKSVVGKCKLWMV
IVTIFLCFIIVIVISLCLVGVTYIDEDENEILELSSNKTFFITLKIPEECANEEELHHLLTERLTDTYRQ
SPSLSRFFTSADILDFSVENATVTYHLQFGVPSEDDDFMKYMMSEELVLGIMRQSFHDKNISTCESLGLD
PESLLLYE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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