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Report for CCDS52771.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52771.1 Public Mus musculus 9 Tbrg1 23 108 98 CCDS HistoryNCBI Gene:21376Re-query CCDS DB by CCDS ID:52771.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52771.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117654.2 ENSMUSP00000112600.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117654.2Link to Ensembl Protein Viewer:ENSMUSP00000112600.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117654Re-query CCDS DB by Protein ID:ENSMUSP00000112600
Original member Current member NCBI NM_025289.3 NP_079565.2 Accepted alive Link to Nucleotide Sequence:NM_025289.3Link to Protein Sequence:NP_079565.2Re-query CCDS DB by Nucleotide ID:NM_025289Re-query CCDS DB by Protein ID:NP_079565Link to BLAST:NP_079565.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079565.2 406 Q3UB74 406 100% 0 0

Chromosomal Locations for CCDS 52771.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 37649358 37649503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37650031 37650173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37650949 37651059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37651290 37651387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37652615 37652761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37653033 37653169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37654216 37654436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37655022 37655092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37656998 37657144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGAGCGTGTTGAGCGGCCTGGCCTCCGAGCCGCGCACCCCGCTGTCCAGCAAGGCCAGGATGAAAAGGC
TCCCGAGGAAGAGCCAGAACGAGAAGTACCGGCTGAAGTACCTGCGGCTGCGCAGAGCAGCTAAGGCCAC
GGTGTTTGAAAATGCTTCCATCTGTGATGAAATTGCTCGTCTTGAGGAAAAATTTCTTAAAGCAAAGGAA
GAAAGAAGATACTTGCTGAAGAAGCTCCTCCAGATACATGCTCTAACTGAAGGGGAGCCACAGGCCGCTG
CTCCTTCCCACAGCTCCAGTTTGCCCCTGCCTTATGGTGTCACCAGCTCTGTGGGAACTATGCAGGGAGC
CGGGCCCAGCACTGGGGCCGAGGAACCATTTGCGAAGAAATCCAAGAAGGAGAAGAAAGAAAAGGGCAAG
GAGAACAGCAAACTGGAAGTTCTGAAGAAAACATCCAAGAAAAAGAAAATGGAGGGAGGTGCTCGAAAAC
TGGTTCGACCCATTGCCCTGGATCCTTCAGGACAGCCTGTGTTCCCCATCGGACTAGGGGGTCTGACAGT
ATACAGTCTGGGGGAGATCATCACCAACCGACCTGGCTTCCATGATGAGAATGCCATCTATCCTGTGGGC
TACTGCAGTACCCGAGTGTATGCTAGCATGAAGTGCCCAGACCAGAAGTGTCTGTATACCTGTCAGATCA
AGGACGGCGGTGTACAGCCTCAGTTTGAAATTGTTCCTGAAGATGACCCCCAGAATACCATCGTCGGCTC
CTCTGCAGATGCCTGTTATGAAGAACTGCTCAGGGCCATCAGTGCCACAACAGGGAAACTGATGCCCAAC
CCACTTTCATGCGGTGCCGACTTCTTTGGGTTTTCTCATCCAACCATCCACAACCTGATTCAGAGTTGTC
CAGAAGCTCAAAACTGTGTCAATTACCAGTGGGTGAAATTTGATGCGTGCAAACCCAGGAAGGGGCAGCT
CTCTCAGGAACTGCCAGAGAATGATGCAACTATGAGCCTTGAAGCCTTCCAGACACAGACGTTTGATGAT
GACCATGATGATTCCATTCTGCCAGGCTCCCTGGACCTCCCTGAGCTTCAGCATGAAGCCTTTGTGTCAT
CTTACCAGCCAGAGTTCCTGACACACGAACCCTTGGTTGACACTGACCTGCAGCACCTGAAATCTCCATC
CCAGTGTAGCCCAATTCAGTCTTCAGATTGA

Translation (406 aa):
MSVLSGLASEPRTPLSSKARMKRLPRKSQNEKYRLKYLRLRRAAKATVFENASICDEIARLEEKFLKAKE
ERRYLLKKLLQIHALTEGEPQAAAPSHSSSLPLPYGVTSSVGTMQGAGPSTGAEEPFAKKSKKEKKEKGK
ENSKLEVLKKTSKKKKMEGGARKLVRPIALDPSGQPVFPIGLGGLTVYSLGEIITNRPGFHDENAIYPVG
YCSTRVYASMKCPDQKCLYTCQIKDGGVQPQFEIVPEDDPQNTIVGSSADACYEELLRAISATTGKLMPN
PLSCGADFFGFSHPTIHNLIQSCPEAQNCVNYQWVKFDACKPRKGQLSQELPENDATMSLEAFQTQTFDD
DHDDSILPGSLDLPELQHEAFVSSYQPEFLTHEPLVDTDLQHLKSPSQCSPIQSSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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