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Report for CCDS19577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19577.1 Public Mus musculus 5 Hnf1a 23 108 98 CCDS HistoryNCBI Gene:21405Re-query CCDS DB by CCDS ID:19577.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19577.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031535.11 ENSMUSP00000031535.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031535.11Link to Ensembl Protein Viewer:ENSMUSP00000031535.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031535Re-query CCDS DB by Protein ID:ENSMUSP00000031535
Original member Current member NCBI NM_009327.3 NP_033353.2 Accepted alive Link to Nucleotide Sequence:NM_009327.3Link to Protein Sequence:NP_033353.2Re-query CCDS DB by Nucleotide ID:NM_009327Re-query CCDS DB by Protein ID:NP_033353Link to BLAST:NP_033353.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033353.2 628 P22361 628 100% 0 0

Chromosomal Locations for CCDS 19577.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 114950061 114950185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114950694 114950838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114950926 114951044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114952579 114952770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114953327 114953528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114953639 114953787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114955250 114955491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114955816 114956002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114960016 114960215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114970519 114970844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1887 nt):
ATGGTTTCTAAGCTGAGCCAGCTGCAGACGGAGCTCCTGGCTGCCCTGCTCGAGTCTGGCCTGAGCAAAG
AGGCCCTGATCCAGGCCTTGGGGGAGCCAGGGCCCTACCTGATGGTTGGAGAGGGTCCCCTGGACAAGGG
GGAGTCCTGCGGTGGGAGTCGAGGGGACCTGACCGAGTTGCCTAATGGCCTTGGAGAAACGCGTGGCTCT
GAAGATGACACGGATGACGATGGGGAAGACTTCGCGCCACCCATTCTGAAAGAGCTGGAGAACCTCAGCC
CAGAGGAGGCAGCCCACCAGAAAGCCGTGGTGGAGTCACTTCTTCAGGAGGACCCATGGCGCGTGGCGAA
GATGGTCAAGTCGTACTTGCAGCAGCACAACATCCCCCAGCGGGAGGTGGTGGACACCACGGGTCTCAAC
CAGTCCCACCTGTCACAGCACCTCAACAAGGGCACACCCATGAAGACACAGAAGCGGGCCGCTCTGTACA
CCTGGTACGTCCGCAAGCAGCGAGAGGTGGCTCAGCAATTCACCCACGCAGGGCAGGGCGGACTGATTGA
AGAGCCCACAGGCGATGAGCTGCCAACTAAGAAGGGGCGTAGGAACCGGTTCAAGTGGGGCCCCGCATCC
CAGCAGATCCTGTTCCAGGCCTACGAGAGGCAAAAAAACCCCAGCAAGGAAGAGCGAGAGACCTTGGTGG
AGGAGTGTAATAGGGCGGAGTGCATCCAGAGGGGGGTGTCACCATCGCAGGCCCAGGGGCTAGGCTCCAA
CCTTGTCACGGAGGTGCGTGTCTACAACTGGTTTGCCAACCGGCGCAAGGAGGAAGCCTTCCGGCACAAG
TTGGCCATGGACACCTATAACGGACCTCCACCGGGGCCAGGCCCGGGCCCTGCGCTGCCTGCTCACAGTT
CCCCCGGCCTGCCCACAACCACCCTCTCTCCCAGTAAGGTCCACGGTGTACGGTACGGACAGTCTGCAAC
CAGTGAGGCAGCCGAGGTGCCCTCCAGCAGCGGAGGTCCCTTAGTCACAGTGTCTGCGGCCTTACACCAA
GTATCCCCCACAGGCCTGGAGCCCAGCAGCCTGCTGAGCACAGAGGCCAAGCTGGTCTCAGCCACGGGGG
GTCCCCTGCCTCCCGTCAGCACCCTGACAGCACTGCACAGCTTGGAGCAGACATCTCCGGGTCTCAACCA
GCAGCCGCAGAACCTTATCATGGCCTCGCTACCTGGGGTCATGACCATCGGGCCCGGGGAGCCTGCCTCC
CTGGGACCCACGTTCACGAACACGGGCGCCTCCACCCTGGTTATCGGTCTGGCCTCCACTCAGGCACAGA
GCGTGCCTGTCATCAACAGCATGGGGAGTAGCCTGACCACGCTGCAGCCGGTCCAGTTTTCCCAACCACT
GCATCCCTCCTATCAGCAGCCTCTCATGCCCCCCGTACAGAGCCACGTGGCCCAGAGCCCCTTCATGGCA
ACCATGGCCCAGCTGCAGAGCCCCCACGCCTTATACAGCCACAAGCCTGAGGTGGCCCAGTACACGCACA
CCAGCCTGCTCCCGCAGACCATGTTGATCACAGACACCAACCTCAGCACCCTTGCCAGCCTCACACCCAC
CAAGCAGGTCTTCACCTCAGACACAGAGGCCTCCAGTGAGCCCGGGCTTCACGAGCCACCCTCTCCAGCC
ACCACCATCCACATCCCCAGCCAGGACCCGTCGAACATCCAGCACCTGCAGCCTGCTCACCGGCTCAGCA
CCAGTCCCACAGTGTCCTCCAGCAGCCTGGTGTTGTATCAGAGTTCCGACTCCAACGGGCACAGCCACCT
GCTGCCATCCAACCATAGTGTCATCGAGACTTTTATCTCCACCCAGATGGCCTCCTCTTCCCAGTAA

Translation (628 aa):
MVSKLSQLQTELLAALLESGLSKEALIQALGEPGPYLMVGEGPLDKGESCGGSRGDLTELPNGLGETRGS
EDDTDDDGEDFAPPILKELENLSPEEAAHQKAVVESLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLN
QSHLSQHLNKGTPMKTQKRAALYTWYVRKQREVAQQFTHAGQGGLIEEPTGDELPTKKGRRNRFKWGPAS
QQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRHK
LAMDTYNGPPPGPGPGPALPAHSSPGLPTTTLSPSKVHGVRYGQSATSEAAEVPSSSGGPLVTVSAALHQ
VSPTGLEPSSLLSTEAKLVSATGGPLPPVSTLTALHSLEQTSPGLNQQPQNLIMASLPGVMTIGPGEPAS
LGPTFTNTGASTLVIGLASTQAQSVPVINSMGSSLTTLQPVQFSQPLHPSYQQPLMPPVQSHVAQSPFMA
TMAQLQSPHALYSHKPEVAQYTHTSLLPQTMLITDTNLSTLASLTPTKQVFTSDTEASSEPGLHEPPSPA
TTIHIPSQDPSNIQHLQPAHRLSTSPTVSSSSLVLYQSSDSNGHSHLLPSNHSVIETFISTQMASSSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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