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Report for CCDS29935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29935.1 Public Mus musculus 19 Slc18a2 23 108 98 CCDS HistoryNCBI Gene:214084Re-query CCDS DB by CCDS ID:29935.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29935.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026084.4 ENSMUSP00000026084.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026084.4Link to Ensembl Protein Viewer:ENSMUSP00000026084.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000026084Re-query CCDS DB by Protein ID:ENSMUSP00000026084
Original member Current member NCBI NM_172523.3 NP_766111.1 Accepted alive Link to Nucleotide Sequence:NM_172523.3Link to Protein Sequence:NP_766111.1Re-query CCDS DB by Nucleotide ID:NM_172523Re-query CCDS DB by Protein ID:NP_766111Link to BLAST:NP_766111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766111.1 517 Q8BRU6 517 100% 0 0

Chromosomal Locations for CCDS 29935.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 59261333 59261453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59262940 59263291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59272882 59272940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59273215 59273298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59273531 59273623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59274314 59274403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59274494 59274537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59274616 59274676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59276490 59276585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59284099 59284177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59284347 59284398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59285259 59285322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59287049 59287168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59287302 59287435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59293812 59293916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGGCCCTGAGCGATCTGGTGCTGCTGCGATGGCTGCGGGACAGCCGCCACTCGCGCAAGCTGATCCTGT
TCATCGTGTTCCTCGCGCTGCTGCTAGACAACATGCTGCTCACCGTCGTAGTTCCCATCATTCCCAGCTA
CCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCC
ACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGG
GGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCC
TCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCC
AAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAGAATTGGCTATCCAATTC
CCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTATGTTTGCCTTCTCCAGCAGCTATGCCTT
CCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTGGGATGGGCATGCTG
GCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGG
GGGTCTTAGTGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGGAAGACAGCTCCTTTCCTGGT
GCTTGCTGCCTTGGTGCTCTTGGATGGAGCTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCA
GAAAGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAGGCTCCA
TCTGCTTTGCAAACATGGGGATAGCCATGCTGGAGCCCGCCCTGCCCATCTGGATGATGGAGACCATGTG
TTCCCGAAAGTGGCAGCTGGGCGTTGCCTTCCTGCCAGCGAGCATCTCTTATCTCATTGGAACCAATATT
TTTGGGATACTTGCACACAAAATGGGAAGGTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCA
GCATTTTATGTATTCCTTTTGCAAAAAATATCTACGGACTCATCGCTCCCAACTTTGGAGTTGGTTTTGC
CATTGGGATGGTGGACTCCTCCATGATGCCTATCATGGGCTACCTGGTGGACCTGCGGCACGTGTCTGTC
TATGGGAGTGTGTATGCCATTGCAGATGTAGCCTTCTGCATGGGGTATGCTATCGGTCCCTCTGCTGGTG
GTGCTATTGCAAAGGCAATTGGCTTTCCTTGGCTCATGACAATTATTGGGATAATTGATATTGTTTTTGC
TCCACTCTGCTTTTTTCTTCGAAGTCCACCTGCTAAGGAAGAAAAAATGGCTATCCTCATGGACCACAAC
TGCCCCATTAAGACAAAGATGTACACTCAGAATAATGTCCAGCCGTACCCCGTCGGTGATGATGAAGAAT
CTGAGAGTGACTGA

Translation (517 aa):
MALSDLVLLRWLRDSRHSRKLILFIVFLALLLDNMLLTVVVPIIPSYLYSIKHEKNTTEIQTARPALTAS
TSESFHSIFSYYNNSTVFTGNATGGLPGGESPKATTTQHTVTNTTVPPDCPSEDKDLLNENVQVGLLFAS
KATVQLLTNPFIGLLTNRIGYPIPMFAGFCIMFISTVMFAFSSSYAFLLIARSLQGIGSSCSSVAGMGML
ASVYTDDEERGNAMGIALGGLAMGVLVGPPFGSVLYEFVGKTAPFLVLAALVLLDGAIQLFVLQPSRVQP
ESQKGTPLTTLLKDPYILIAAGSICFANMGIAMLEPALPIWMMETMCSRKWQLGVAFLPASISYLIGTNI
FGILAHKMGRWLCALLGMIVVGISILCIPFAKNIYGLIAPNFGVGFAIGMVDSSMMPIMGYLVDLRHVSV
YGSVYAIADVAFCMGYAIGPSAGGAIAKAIGFPWLMTIIGIIDIVFAPLCFFLRSPPAKEEKMAILMDHN
CPIKTKMYTQNNVQPYPVGDDEESESD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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