NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15510.1 Public Mus musculus 1 Pea15a 23 108 98 CCDS HistoryNCBI Gene:18611Re-query CCDS DB by CCDS ID:15510.1Re-query CCDS DB by GeneID:18611See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15510.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000013842.11 ENSMUSP00000013842.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000013842.11Link to Ensembl Protein Viewer:ENSMUSP00000013842.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000013842Re-query CCDS DB by Protein ID:ENSMUSP00000013842
Original member NCBI NM_001329869.1 NP_001316798.1 Updated not alive Link to Nucleotide Sequence:NM_001329869.1Link to Protein Sequence:NP_001316798.1Re-query CCDS DB by Nucleotide ID:NM_001329869Re-query CCDS DB by Protein ID:NP_001316798
Current member NCBI NM_001329869.2 NP_001316798.1 Accepted alive Link to Nucleotide Sequence:NM_001329869.2Link to Protein Sequence:NP_001316798.1Re-query CCDS DB by Nucleotide ID:NM_001329869Re-query CCDS DB by Protein ID:NP_001316798Link to BLAST:NP_001316798.1
Original member NCBI NM_011063.3 NP_035193.1 Updated not alive Link to Nucleotide Sequence:NM_011063.3Link to Protein Sequence:NP_035193.1Re-query CCDS DB by Nucleotide ID:NM_011063Re-query CCDS DB by Protein ID:NP_035193
Current member NCBI NM_011063.4 NP_035193.1 Accepted alive Link to Nucleotide Sequence:NM_011063.4Link to Protein Sequence:NP_035193.1Re-query CCDS DB by Nucleotide ID:NM_011063Re-query CCDS DB by Protein ID:NP_035193Link to BLAST:NP_035193.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316798.1 130 Q62048-1 130 100% 0 0
NP_035193.1 130 Q62048-1 130 100% 0 0

Chromosomal Locations for CCDS 15510.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 172198626 172198690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172199111 172199266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172200408 172200579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (393 nt):
ATGGCAGAGTACGGAACTCTCCTTCAGGACCTGACCAACAACATCACCCTTGAAGATCTGGAACAGCTCA
AGTCAGCCTGCAAGGAGGACATCCCCAGTGAGAAGAGTGAGGAGATCACCACAGGCAGTGCCTGGTTTAG
CTTCCTGGAGAGCCACAACAAGCTGGACAAAGACAACCTCTCCTACATTGAGCACATCTTTGAGATATCT
CGCCGTCCTGACCTCCTCACTATGGTGGTTGACTACAGAACCCGTGTGCTGAAGATCTCTGAGGAGGAGG
AGCTGGACACCAAGCTAACCCGTATTCCCAGTGCCAAGAAGTACAAAGACATTATCCGGCAGCCCTCTGA
AGAAGAAATCATCAAATTGGCTCCCCCACCAAAGAAGGCCTGA

Translation (130 aa):
MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEITTGSAWFSFLESHNKLDKDNLSYIEHIFEIS
RRPDLLTMVVDYRTRVLKISEEEELDTKLTRIPSAKKYKDIIRQPSEEEIIKLAPPPKKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH