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Report for CCDS28523.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28523.1 Public Mus musculus 17 Chtf18 23 108 98 CCDS HistoryNCBI Gene:214901Re-query CCDS DB by CCDS ID:28523.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28523.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048054.13 ENSMUSP00000043896.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048054.13Link to Ensembl Protein Viewer:ENSMUSP00000043896.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000048054Re-query CCDS DB by Protein ID:ENSMUSP00000043896
Original member Current member NCBI NM_145409.2 NP_663384.2 Accepted alive Link to Nucleotide Sequence:NM_145409.2Link to Protein Sequence:NP_663384.2Re-query CCDS DB by Nucleotide ID:NM_145409Re-query CCDS DB by Protein ID:NP_663384Link to BLAST:NP_663384.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663384.2 969 Q8BIW9 969 99.7936% 0 2

Chromosomal Locations for CCDS 28523.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25719148 25719284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25719368 25719425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25719652 25719783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25719865 25720009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25720600 25720730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25720824 25720973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25721059 25721283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25722091 25722238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25722646 25722776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25722844 25722942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25723220 25723313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25723403 25723551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25723643 25723766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25724003 25724100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25724529 25724738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25725496 25725634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25725742 25725794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25725880 25725972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25726375 25726549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25726701 25726848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25726941 25727120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25727247 25727337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2910 nt):
ATGGAAGACTACGAGGAAGATCTGTATGGTGTGGAGGATGATTTCCAAAACCAGTTCGCAGCTGAGCTCG
AAGTGCTGGCTGAGCTGGAAGGAACACGGGACCAGGCTCCTCCTGGGACCCTCCAAACTCCAGCGAGCCG
CCCTCCGCTAACCTTCGAAGAGGCCATCGCTGGTGGGGACACTGTCCCGCGTCCCTGCCCTGCAGGGTCG
CCAGGAAATGTCAACCGCAATACTAGAAAGAATGTTCGTAGGGACCAGCCCGCGCCCTCCAGCCCCATGG
TCAAACGACCCAGGTTGGACGTGGTGAAGAAGCTGAACTTTGAGCCAGATATGGAGGAGCTCTTATATCC
AGATTCCCCTCCTGGGGACATTACCCCTCCACCGAGTCCAGAGGTCTTCCCTGAGATGTTGGATGCTGGG
TATTCAGATGCTAATGCTGACAAAGACCTCATGCAGACATTGCCAAGTCCCCGAAATCGCAATCCTGTCC
TGAGACGGCCTCCTATCTTAGAAGATTATATCAATGTGACATCCACAAGTGGAGAACGGGCCTTTTTGGT
GCTTCGGGCTGACCTCATAGGCCCTGGGGTGCAGAACCCTCTTCTAGATGTCCACTGGCGAGGCTGTGGC
CAACTGGACCTGCTGGGTGTCCCCTTCGCCTCCCTGAAGGAGCAAGTTGATAGCAAGAGACGGCAACAAC
TGCTGGAGGATGCCCAACAGCTTTCAGACACTCTACACAGCCTCAGGTCTGAAGGAGAGGAGGCTGTGCT
TGAAGGGCCCCCTGCGGAGGAGCCAGCCCCTGGCCAGAACACCGCTCAGCACTGCCTCTGGGTGGATGAG
TTTGCACCTCAGCATTACACGGAACTGCTCAGTGACGATTTTACCAACCGCTGCCTACTCAAGTGGCTGA
AGCTATGGGACCTTGTGGTGTTTGGCCGTGAGAGACCTGCCCGGAAGCCCAGACCTGGTGTAGAGACCAC
CCGGGTTGGGAAGGAGGCTACAGCCCCTGGCAAGTGGAAAAGCCATGAGCAGGCACTGGAGGAGATGCTA
GAAGCTGAACTGGACCCTAGCCAGAGGCCTCGGCAGAAGGTGGCACTGTTGTGTGGCCCTCCAGGACTAG
GCAAGACCACGCTGGCACATGTGGTCGCAAGGCATGCAGGGTATTGCGTGGTAGAGATGAATGCAAGTGA
TGACCGTAGCCCGGAGGCCTTCCGTACACGCATTGAAGCAGCTACGCAAATGGAGTCGGTTCTGGGTGTG
GGTGGGAGGCCCAACTGCCTGGTTATTGATGAGATCGACGGGGCCCCCACGGCGGCCATCAACGTTCTTT
TGGGTATCCTGAATCGCAAGGGTCCGCAGGAGGCCGACCAAGGAGGCACAGCTGTGGCCGCAGGGGGGCG
GCGGCGCAGGGCCGAGGGGGGTCTCCTAACCAGGCCTATCATCTGCATCTGCAATGATCAGTTCACACCT
TCTCTGAGGCAGCTGAAGCAGCAGGCTCTTCTGCTCCACGTCCCCCCAACTCTGCCCTCCAGGCTGGTGC
AGCGGCTCCAGGAGATCTCCCTGCAGCATGGCATGCGCTCTGACCCGGGTGCACTGGTTGCCCTCTGTGA
GAAGACCGACAATGACATCCGTGCCTGCATCAACACCCTGCAGTTTCTGTATGGGAGGGGCCGGCGGGAG
CTGAGTGTGAAGGCTGTGCAGACCACTCATGTCGGCCTGAAGGACCAGCGCAAGGGGCTATTCTCTGTGT
GGCAAGAGGTCTTCCAGTTGCCCAGGACTCAAAGGAGAATCGTGGGCCAGGACCTGATGCTGCCAGCCCA
CGCTCTCCTGCTCAGCAATGGTGACAAGGGCTCTCTGACCCTGGCCTCCCAGCGCTTTTACCACATCCTG
CGTGTGACCACCTCTGCGGGCGAGCATGAGAAGGTTGTCCAGGGCCTGTTTGACAACTTTCTACGCCTTC
GGCTTCGGGACTCCAGCTTAAGCACCGTGTGCTGTGCCCTCGACTGGCTGGCCTTTGATGACCTGCTGGA
GCAGGCTGCCCACCGTGGCCAGAGCTTCCAGTTGCTGTGCTACTTGCCCTTCGTGCCTGCGGCCTTCCAC
GTGCTCTTTGCCTCCAGCCATGTGCCACGAATCACTTTCCCCAGCAGCCAGCAGGAGGCCCAGACTCGGA
TGAGCCAGACAAGGAACCACATACAGACACTGGTGTCAGGTATGGCACCGACCACGCGTAGCCGGGCCAC
ACCACAGGCCCTTGTTCTAGATACTCTCTGCCTGCTCCTGGATGTCCTCGCACCCAAGCTGCGCCCCGTG
AGCACACAGCTGTACAGTGCCCATGAGAAGCAGCAGTTGTCCTGCCTTGTGGGTACCATGCTTGCCTACA
GTCTCACCTACCACCAGGAGCGCACACCTGATGGGCAGTACCTCTACAAGCTGGAGCCGAATGTGGAAGA
GGTCTGCCGCTTCCCTGAACTACCTGCCCGAAAGCCCCTCACCTACCAGGCTAAGCAGCTTATTGCTCGG
GAGATTGAAATGGAGAAGATGCGCAGGGCAGAGGCTTTGGCCTGGGCTCGAAGTGGCCCCCAGGTGGACC
AGGGCTCCTCAGGGCCTGCAAGTCTGTGGACAGACAGTGGGGAAAAGGGGACAAGGCAGCCTGTCCCACG
TAACCATGAGCAGCGCCTAGAACACATCATGACGAGAGCAACCGTGCAGGAGCAGCCTGAGAGGGACTTC
TTTGGACGTGTGGTCATCAGGAAAGTGGCAGTCCCGAGCAGAGAGGTTGAGGCCCCCCAGAAGGACGCGG
ACGAGTGGCGCATGGGTGTGGCAGTGGGCAGGAGTGAGGTGTGGTTCCGGTTCAACGAGGGCGTCTCAAA
TGCTGTTCGGCGCAGCCTGTACATCAGGGACCTGCTGTAG

Translation (969 aa):
MEDYEEDLYGVEDDFQNQFAAELEVLAELEGTRDQAPPGTLQTPASRPPLTFEEAIAGGDTVPRPCPAGS
PGNVNRNTRKNVRRDQPAPSSPMVKRPRLDVVKKLNFEPDMEELLYPDSPPGDITPPPSPEVFPEMLDAG
YSDANADKDLMQTLPSPRNRNPVLRRPPILEDYINVTSTSGERAFLVLRADLIGPGVQNPLLDVHWRGCG
QLDLLGVPFASLKEQVDSKRRQQLLEDAQQLSDTLHSLRSEGEEAVLEGPPAEEPAPGQNTAQHCLWVDE
FAPQHYTELLSDDFTNRCLLKWLKLWDLVVFGRERPARKPRPGVETTRVGKEATAPGKWKSHEQALEEML
EAELDPSQRPRQKVALLCGPPGLGKTTLAHVVARHAGYCVVEMNASDDRSPEAFRTRIEAATQMESVLGV
GGRPNCLVIDEIDGAPTAAINVLLGILNRKGPQEADQGGTAVAAGGRRRRAEGGLLTRPIICICNDQFTP
SLRQLKQQALLLHVPPTLPSRLVQRLQEISLQHGMRSDPGALVALCEKTDNDIRACINTLQFLYGRGRRE
LSVKAVQTTHVGLKDQRKGLFSVWQEVFQLPRTQRRIVGQDLMLPAHALLLSNGDKGSLTLASQRFYHIL
RVTTSAGEHEKVVQGLFDNFLRLRLRDSSLSTVCCALDWLAFDDLLEQAAHRGQSFQLLCYLPFVPAAFH
VLFASSHVPRITFPSSQQEAQTRMSQTRNHIQTLVSGMAPTTRSRATPQALVLDTLCLLLDVLAPKLRPV
STQLYSAHEKQQLSCLVGTMLAYSLTYHQERTPDGQYLYKLEPNVEEVCRFPELPARKPLTYQAKQLIAR
EIEMEKMRRAEALAWARSGPQVDQGSSGPASLWTDSGEKGTRQPVPRNHEQRLEHIMTRATVQEQPERDF
FGRVVIRKVAVPSREVEAPQKDADEWRMGVAVGRSEVWFRFNEGVSNAVRRSLYIRDLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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