NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5045.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5045.1 Public Homo sapiens 6 SIM1 24 110 108 CCDS HistoryNCBI Gene:6492Re-query CCDS DB by CCDS ID:5045.1Re-query CCDS DB by GeneID:6492See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5045.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262901.4 ENSP00000262901.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000262901.4Link to Ensembl Protein Viewer:ENSP00000262901.4Re-query CCDS DB by Nucleotide ID:ENST00000262901Re-query CCDS DB by Protein ID:ENSP00000262901
Original member Current member EBI ENST00000369208.8 ENSP00000358210.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369208.8Link to Ensembl Protein Viewer:ENSP00000358210.4Re-query CCDS DB by Nucleotide ID:ENST00000369208Re-query CCDS DB by Protein ID:ENSP00000358210
Original member Current member NCBI NM_001374769.1 NP_001361698.1 Accepted alive Link to Nucleotide Sequence:NM_001374769.1Link to Protein Sequence:NP_001361698.1Re-query CCDS DB by Nucleotide ID:NM_001374769Re-query CCDS DB by Protein ID:NP_001361698Link to BLAST:NP_001361698.1
Original member Current member NCBI NM_005068.3 NP_005059.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005068.3Link to Protein Sequence:NP_005059.2Re-query CCDS DB by Nucleotide ID:NM_005068Re-query CCDS DB by Protein ID:NP_005059Link to BLAST:NP_005059.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001361698.1 766 P81133 766 100% 0 0
NP_005059.2 766 P81133 766 100% 0 0

Chromosomal Locations for CCDS 5045.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 100390361 100391091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100393487 100393889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100420790 100420958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100447268 100447415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100448146 100448252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100448479 100448678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100449363 100449448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100449591 100449699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100450267 100450356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100453762 100453844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100463294 100463468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2301 nt):
ATGAAAGAAAAGTCCAAAAATGCTGCGCGGACTAGGAGGGAGAAGGAAAACAGTGAATTTTATGAACTGG
CTAAATTACTGCCTTTGCCCTCGGCTATCACCTCGCAGCTGGACAAAGCATCCATAATCAGACTCACGAC
CAGCTATCTCAAAATGAGAGTGGTGTTCCCAGAAGGGCTCGGCGAGGCGTGGGGCCACTCAAGTCGGACC
AGCCCCCTGGACAACGTTGGCCGAGAACTGGGCTCCCATCTGCTCCAGACCCTGGATGGCTTCATCTTCG
TGGTAGCCCCAGATGGGAAGATCATGTACATCTCAGAGACAGCCTCAGTCCACTTGGGTCTTTCTCAGGT
AGAGCTGACCGGAAACAGCATTTATGAATACATTCACCCGGCAGACCACGACGAGATGACGGCGGTGCTC
ACCGCCCATCAACCCTACCACTCTCACTTCGTGCAGGAGTATGAGATCGAGCGCTCCTTCTTCCTGAGGA
TGAAGTGCGTCTTGGCCAAGCGTAACGCCGGCCTCACCTGTGGCGGCTACAAGGTCATCCACTGCAGCGG
CTACTTGAAGATCCGCCAGTACAGCCTGGACATGTCCCCCTTCGACGGCTGCTACCAAAACGTGGGCCTG
GTGGCCGTGGGCCACTCGCTGCCTCCCAGCGCCGTCACGGAGATCAAGCTACACAGCAATATGTTTATGT
TCCGCGCCAGCCTGGACATGAAGCTCATCTTTCTGGACTCCAGGGTGGCGGAGCTGACGGGGTACGAACC
TCAGGACCTGATTGAGAAGACTCTGTACCACCATGTGCACGGCTGCGACACCTTCCACCTGCGCTGCGCG
CACCATTTGCTGCTGGTGAAGGGACAGGTGACCACCAAGTACTACAGGTTCCTGGCGAAACACGGCGGCT
GGGTATGGGTGCAGAGCTACGCGACCATCGTGCACAACAGTCGCTCCTCCAGGCCACACTGTATCGTCAG
CGTCAACTATGTCCTCACAGACACAGAATACAAAGGGCTGCAGCTCTCCCTGGATCAGATCTCAGCCTCC
AAACCAGCCTTCTCCTATACCAGCAGCTCCACCCCCACCATGACTGACAACAGAAAGGGGGCCAAATCCC
GGCTCTCCAGCTCAAAGTCAAAATCCAGGACTTCCCCATACCCTCAGTATTCGGGATTTCACACAGAAAG
ATCGGAATCTGATCATGACAGCCAGTGGGGCGGAAGTCCCTTGACCGACACGGCCTCTCCGCAGCTTCTG
GACCCCGCCGATAGGCCTGGCTCCCAGCACGACGCATCGTGCGCCTACAGACAGTTTTCGGACCGCAGCT
CTCTCTGCTATGGCTTTGCGCTTGACCACTCGAGGCTGGTGGAAGAGAGGCATTTCCATACCCAGGCCTG
TGAAGGAGGCCGATGTGAGGCAGGCAGGTACTTCCTGGGAACGCCGCAGGCCGGGAGGGAGCCCTGGTGG
GGCTCTCGCGCAGCCTTGCCCCTGACAAAGGCCTCCCCAGAAAGCAGAGAAGCCTATGAAAACAGCATGC
CTCACATCGCTTCAGTCCACAGGATCCATGGGCGAGGTCATTGGGATGAAGATAGTGTGGTCAGTTCTCC
AGACCCTGGGTCGGCCAGTGAATCAGGTGACCGATATCGTACTGAGCAGTATCAAAGTAGCCCACATGAA
CCCAGCAAAATTGAAACTCTTATAAGAGCCACTCAGCAAATGATTAAAGAAGAAGAGAACAGATTACAGC
TAAGGAAAGCCCCCTCAGACCAACTGGCTTCCATTAATGGGGCTGGGAAAAAACACTCCCTGTGTTTTGC
AAACTACCAACAGCCCCCACCAACAGGTGAAGTCTGCCATGGCTCTGCTCTTGCCAACACTTCACCATGT
GACCATATCCAGCAGAGAGAGGGAAAAATGTTGAGCCCCCATGAAAATGACTATGACAACAGTCCCACCG
CACTATCTCGGATAAGTAGTCCCAATTCGGATCGCATTTCAAAATCCAGTTTGATCCTAGCTAAAGACTA
TCTGCATTCGGATATATCTCCTCATCAGACAGCAGGAGACCACCCTACTGTCTCTCCAAACTGCTTTGGC
TCTCACCGGCAGTATTTTGACAAGCATGCTTACACATTAACTGGATATGCCCTGGAGCACTTATATGACA
GCGAAACCATTAGAAACTATTCCTTGGGCTGTAATGGCTCACACTTTGATGTAACTTCCCATCTGAGGAT
GCAACCAGACCCAGCACAAGGACACAAGGGAACATCTGTTATAATAACCAACGGAAGCTGA

Translation (766 aa):
MKEKSKNAARTRREKENSEFYELAKLLPLPSAITSQLDKASIIRLTTSYLKMRVVFPEGLGEAWGHSSRT
SPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSIYEYIHPADHDEMTAVL
TAHQPYHSHFVQEYEIERSFFLRMKCVLAKRNAGLTCGGYKVIHCSGYLKIRQYSLDMSPFDGCYQNVGL
VAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEPQDLIEKTLYHHVHGCDTFHLRCA
HHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDTEYKGLQLSLDQISAS
KPAFSYTSSSTPTMTDNRKGAKSRLSSSKSKSRTSPYPQYSGFHTERSESDHDSQWGGSPLTDTASPQLL
DPADRPGSQHDASCAYRQFSDRSSLCYGFALDHSRLVEERHFHTQACEGGRCEAGRYFLGTPQAGREPWW
GSRAALPLTKASPESREAYENSMPHIASVHRIHGRGHWDEDSVVSSPDPGSASESGDRYRTEQYQSSPHE
PSKIETLIRATQQMIKEEENRLQLRKAPSDQLASINGAGKKHSLCFANYQQPPPTGEVCHGSALANTSPC
DHIQQREGKMLSPHENDYDNSPTALSRISSPNSDRISKSSLILAKDYLHSDISPHQTAGDHPTVSPNCFG
SHRQYFDKHAYTLTGYALEHLYDSETIRNYSLGCNGSHFDVTSHLRMQPDPAQGHKGTSVIITNGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH