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Report for CCDS20172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20172.1 Public Mus musculus 6 Vmn1r4 23 108 98 CCDS HistoryNCBI Gene:171194Re-query CCDS DB by CCDS ID:20172.1Re-query CCDS DB by GeneID:171194See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20172.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096612.3 ENSMUSP00000094369.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096612.3Link to Ensembl Protein Viewer:ENSMUSP00000094369.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000096612Re-query CCDS DB by Protein ID:ENSMUSP00000094369
Original member Current member EBI ENSMUST00000176838.1 ENSMUSP00000135323.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176838.1Link to Ensembl Protein Viewer:ENSMUSP00000135323.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176838Re-query CCDS DB by Protein ID:ENSMUSP00000135323
Original member Current member EBI ENSMUST00000227073.1 ENSMUSP00000153919.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227073.1Link to Ensembl Protein Viewer:ENSMUSP00000153919.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227073Re-query CCDS DB by Protein ID:ENSMUSP00000153919
Original member Current member NCBI NM_134176.1 NP_598937.1 Accepted alive Link to Nucleotide Sequence:NM_134176.1Link to Protein Sequence:NP_598937.1Re-query CCDS DB by Nucleotide ID:NM_134176Re-query CCDS DB by Protein ID:NP_598937Link to BLAST:NP_598937.1

Chromosomal Locations for CCDS 20172.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 56956513 56957406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGTTCTCACTCAAAAATGTCCTTTATTTCCAAGCTGGGCTTGGAGTCCTGGCCAACATGTTTCTTCTTT
GTTTCTATATTTACATAATCCTTGGTCACAGACCGAAGCCCACGGACCTGACTTCCTGCCAACTGACCTT
CGTTCACATAATGATGCTCCTTACTGGAGGGGATATTTTGCTTACAGACTTACTTGCATCACTGAACACT
GAGAATGACTTCAAATGTAAGGCAACTTTTTATATAAACAGGATGATGAGAGGCCTCTCTATCTCTGCCA
CCTGCCTCCTGAGCGTGTTCCAGGCTGTCACAATCAGTCCCAATACCTCACTGTTGGCAAATTTTAAACA
AAAAGTAAAAAAATACATGATCAGTGCTTTATTTTGTATTTGGTTTTTCAATTTCTCTGTCAGTACTGAC
ATAATATTCTATGTTGGTGGTTTTACCAATGTGAGTGAGAACAAACAGATAATGGTCACTAAATCTTGCT
CACTCTTACCCTTGAACTACATCATCAGAGGATTGATTTTAACAATGACCATCTTAAGAGACGTGTTTCT
TGTAGGAGTCATGCTGACTACAAGTGTATACATGGTGATTTTCTTGTTCAGGCATCAGAGGCAATGCAAG
CATCTTCATAGCATCAGCCACCTGAGAGCCTCCCCTGAGAAAAGGGCTACCCAGACCATCGTGCTGCTGG
TGGTTTTCTTTGTGGTCATGTACTGGGTGGACTTCATCATCTCATCCACCTCAGTCCTGTTATGGATGTA
TGACCCAGTTCTCCTGACTGCTCAGAAGTTTGTGGTGAATGCCTATCCCACAATTACTCCTTTGGTACAA
ATCAGTTCTGATAACAGAATAATCAATAGGCTGAAAAACCTACAGTCACAATGA

Translation (297 aa):
MFSLKNVLYFQAGLGVLANMFLLCFYIYIILGHRPKPTDLTSCQLTFVHIMMLLTGGDILLTDLLASLNT
ENDFKCKATFYINRMMRGLSISATCLLSVFQAVTISPNTSLLANFKQKVKKYMISALFCIWFFNFSVSTD
IIFYVGGFTNVSENKQIMVTKSCSLLPLNYIIRGLILTMTILRDVFLVGVMLTTSVYMVIFLFRHQRQCK
HLHSISHLRASPEKRATQTIVLLVVFFVVMYWVDFIISSTSVLLWMYDPVLLTAQKFVVNAYPTITPLVQ
ISSDNRIINRLKNLQSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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