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Report for CCDS3897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3897.1 Public Homo sapiens 5 SUB1 24 110 108 CCDS HistoryNCBI Gene:10923Re-query CCDS DB by CCDS ID:3897.1Re-query CCDS DB by GeneID:10923See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3897.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265073.9 ENSP00000265073.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265073.9Link to Ensembl Protein Viewer:ENSP00000265073.4Re-query CCDS DB by Nucleotide ID:ENST00000265073Re-query CCDS DB by Protein ID:ENSP00000265073
Original member Current member EBI ENST00000506237.5 ENSP00000422078.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506237.5Link to Ensembl Protein Viewer:ENSP00000422078.1Re-query CCDS DB by Nucleotide ID:ENST00000506237Re-query CCDS DB by Protein ID:ENSP00000422078
Original member Current member EBI ENST00000512913.5 ENSP00000422806.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512913.5Link to Ensembl Protein Viewer:ENSP00000422806.1Re-query CCDS DB by Nucleotide ID:ENST00000512913Re-query CCDS DB by Protein ID:ENSP00000422806
Original member Current member EBI ENST00000515355.5 ENSP00000426850.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515355.5Link to Ensembl Protein Viewer:ENSP00000426850.1Re-query CCDS DB by Nucleotide ID:ENST00000515355Re-query CCDS DB by Protein ID:ENSP00000426850
Original member Current member EBI ENST00000502897.5 ENSP00000427100.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000502897.5Link to Ensembl Protein Viewer:ENSP00000427100.1Re-query CCDS DB by Nucleotide ID:ENST00000502897Re-query CCDS DB by Protein ID:ENSP00000427100
Original member Current member NCBI NM_006713.4 NP_006704.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006713.4Link to Protein Sequence:NP_006704.3Re-query CCDS DB by Nucleotide ID:NM_006713Re-query CCDS DB by Protein ID:NP_006704Link to BLAST:NP_006704.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006704.3 127 P53999 127 100% 0 0

Chromosomal Locations for CCDS 3897.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 32588513 32588584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32591563 32591685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32598961 32599069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32601005 32601084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGCCTAAATCAAAGGAACTTGTTTCTTCAAGCTCTTCTGGCAGTGATTCTGACAGTGAGGTTGACAAAA
AGTTAAAGAGGAAAAAGCAAGTTGCTCCAGAAAAACCTGTAAAGAAACAAAAGACAGGTGAGACTTCGAG
AGCCCTGTCATCTTCTAAACAGAGCAGCAGCAGCAGAGATGATAACATGTTTCAGATTGGGAAAATGAGG
TACGTTAGTGTTCGCGATTTTAAAGGCAAAGTGCTAATTGATATTAGAGAATATTGGATGGATCCTGAAG
GTGAAATGAAACCAGGAAGAAAAGGTATTTCTTTAAATCCAGAACAATGGAGCCAGCTGAAGGAACAGAT
TTCTGACATTGATGATGCAGTAAGAAAACTGTAA

Translation (127 aa):
MPKSKELVSSSSSGSDSDSEVDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRDDNMFQIGKMR
YVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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