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Report for CCDS26038.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26038.1 Public Mus musculus 12 Acot6 23 108 98 CCDS HistoryNCBI Gene:217700Re-query CCDS DB by CCDS ID:26038.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26038.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056822.3 ENSMUSP00000056131.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056822.3Link to Ensembl Protein Viewer:ENSMUSP00000056131.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000056822Re-query CCDS DB by Protein ID:ENSMUSP00000056131
Original member NCBI NM_172580.1 NP_766168.1 Updated not alive Link to Nucleotide Sequence:NM_172580.1Link to Protein Sequence:NP_766168.1Re-query CCDS DB by Nucleotide ID:NM_172580Re-query CCDS DB by Protein ID:NP_766168
Current member NCBI NM_172580.2 NP_766168.1 Accepted alive Link to Nucleotide Sequence:NM_172580.2Link to Protein Sequence:NP_766168.1Re-query CCDS DB by Nucleotide ID:NM_172580Re-query CCDS DB by Protein ID:NP_766168Link to BLAST:NP_766168.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766168.1 419 Q32Q92-1 419 100% 0 0

Chromosomal Locations for CCDS 26038.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84100972 84101428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84106443 84106645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84108940 84109539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGGCGGCGACACTGAGCGTGGAGCCCGCGGGCCGCAGCTGCTGGGACGAACCGCTGAGCATCGCCGTGC
GCGGCCTGGCCCCCGAGCAGCCCGTCACGCTGCGCTCTGTCCTGCGCGACGAGAAGGGCATGCTCTTCCG
AGCCCACGCGCGCTACCGCGCGGACTCCCACGGCGAGCTGGACCTGGCGCGCACGCCCGCGCTGGGCGGC
AGCTTCTCGGGGCTCGAGCCCATGGGGCTGCTCTGGGCCATGGAGCCCGATCGGCCTTTCTGGCGCCTGA
TCAAGCGCGATGTGCAGATACCCTTCGTGGTGGAGCTGGAGGTGCTGGACGGACACGAGCCGGATGGCGG
GCAGCGGCTGGCGCGGGCGGTGCACGAGCGTCACTTCATGGCTCCCGGGGTGCGGCGCGTGCCCGTGCGC
GAGGGCCGGGTGCGCGCCACGCTCTTCCTGCCCCCAGGCAAGGGCCAGTTCCCTGGGATCATCGATTTGT
ATGGAAGTATCGGTGGCTTATGTGAACATAGAGCCAGCCTTCTGGCTGGGCATGGTTTTGCCGTGCTTGC
CCTGGCTTATTTCCAGTTTGAAGACCTCCCTGAAAATCTGAGTGACGTTCGCCTGGAGTACTTTGAAGAA
GCCTTAGCTTTGATGCTACGCCATCCTCAGGTGAAAGGCCCAAATATTGGACTTATTGGTGTCTCCAAAG
GTGCTGATCTGTGCCTCTCGATGGCTGCTTTCCTGAAGGACAACATCACAGCCACTGTCCTTATAAATGC
CTGTGTGGCCAACACATTAGTACCTCTGTATTACAAGGATCTGTTTGTTCCTGAGCTTGGGTGTGATCAA
ACAAAAAATAAGTCAGGCCTTATGGATTTGAGGGATATGTGGAACAATCCACTGGAGGAACCCAACCACC
AGAGTCTTATCCCATTGGAAAAGGCCCAGGGACCCTTCCTGTTTCTTGTGGGCATGGATGATCACAACTG
GAAGAGTGACGTCTATGCTCGTATAGCCTGTGAACGCCTGCAAGCCCATGGAAAAGACAGACCCCAGATA
ATCTACTATCCAGAAACTGGTCACTGTATTGAGCCACCTTATTTTCCTCCTCCCATAGCCACTGTACACT
TCGTGTTGGGTGAAGCAGTCTTCAATGGAGGTAAGCCACGTGCTCAATCAAGGGCACAGCTGGATGCCTG
GCAACGCATTCAAACTTTCTTCCAAAAATATCTCAATGGTGAAAAGCCTGCCAGGCACAGCAAACTGTAA

Translation (419 aa):
MAATLSVEPAGRSCWDEPLSIAVRGLAPEQPVTLRSVLRDEKGMLFRAHARYRADSHGELDLARTPALGG
SFSGLEPMGLLWAMEPDRPFWRLIKRDVQIPFVVELEVLDGHEPDGGQRLARAVHERHFMAPGVRRVPVR
EGRVRATLFLPPGKGQFPGIIDLYGSIGGLCEHRASLLAGHGFAVLALAYFQFEDLPENLSDVRLEYFEE
ALALMLRHPQVKGPNIGLIGVSKGADLCLSMAAFLKDNITATVLINACVANTLVPLYYKDLFVPELGCDQ
TKNKSGLMDLRDMWNNPLEEPNHQSLIPLEKAQGPFLFLVGMDDHNWKSDVYARIACERLQAHGKDRPQI
IYYPETGHCIEPPYFPPPIATVHFVLGEAVFNGGKPRAQSRAQLDAWQRIQTFFQKYLNGEKPARHSKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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