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Report for CCDS36497.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
36497.1 |
Public |
Mus musculus |
12 |
Mlh3 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:217716](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:36497.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 12 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 36497.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000019378.7 |
ENSMUSP00000019378.6 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000019378.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000019378.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000019378](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000019378](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000166821.7 |
ENSMUSP00000129900.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000166821.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000129900.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000166821](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000129900](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001304475.1 |
NP_001291404.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001304475.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001291404.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001304475](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001291404](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001291404.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_175337.2 |
NP_780546.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_175337.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_780546.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_175337](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_780546](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_780546.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 36497.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (4236 nt): ATGATCAGGTGTCTATCAGATGACGTAAAAACCAAGTTGCGTTCCGGTTTAGCCATAAGCTCCTTGGGCC AGTGTGTTGAAGAACTTACCCTTAACAGTATTGATGCTGAAGCAACATGTGTGGCCATCAGAGTGAATAT GGAAACCTTCCAAGTTCAAGTGATAGACAATGGACTTGGGATGGCGGGGGACGATGTAGAGAAGGTGGGA AACCGGTATTTTACTAGTAAATGCCACTCAGTGCGGGACTTGGAGAACCCAGCATTTTATGGCTTCCGAG GAGAGGCCTTGGCAAGTATAGCCGACATGGCTGGTGCTGTGGAGATTTCATCCAAGAAAAACACAACACT GAAAACCTTTGTGAAAATGTTTCAGAATGGAAAAGCCCTTGCCACCCATGAGGCTGATTTGACCAGACCA AGTGTGGGGACTACAGTAACGGTCTATAACCTGTTTTACCAGTTTCCTGTGCGGAGGAAAAGCATGGATC CTAGACTAGAGTTTGAGAAAGTTCGGCAGAGGGTAGAAGCTCTCTCACTTATGCACCCCTCCATTTCTTT CTCTTTGAGGAACGATGTATCTGGATCCATGGTTCTTCAGCTCCCTAAAACCAAAGACATATGCTCTCGA TTCTGTCAAATTTACGGATTGGGCAAGTCCCAAAAGTTAAGAGAAATACGTTTTAAATACAAGGAATTTG AGTTCAGTGGCTACATCAGCTCTGAAGCACACTACAATAAGAATATGCAGTTTTTGTTTGTGAACAGAAG ACTAGTTTTAAGAACAAAGTTGCATAAACTTATTGACTTTTTATTAAGAAAAGAAAGCATTATATGCAGG CCAAAGAATGGCTCTGCCAGTAGGCAAATGAATTCAAGTCCTCGACACCGTTCTGCCTCAGAACTCCACG GGATATATGTAATCAATGTGCAGTGCCCTTTCTGTGAGTATGATGTCTGCATAGAGCCAGCCAAAACTCT GATTGAGTTTCAGAGCTGGGATACCGTGTTGATTTGTATTCAGGAAGGAGTAAAAAGGTTTTTAAAGCAA GAAAAATTATTTGTAGAATTATCAGGTGAAGATATTAAGGAATTTAATGAAGATAATGGTTTTAGTTTGT TTGGCACGACTCTTCAGACACATGTGTCTACTCATGAGAAGTGTGACCAGAGCAGTTTCCGGGAAGCGTG TAATAAAATTCTGGATTCCTATGAAATGTTTAATTTGCAGTCAAAAGCTGTGAAAAGAATAGCTACTCTA GAAAATAAAACCAGACAAAACCCTGGTGATTCAGAAACTATCAGAAAAAAGACAGTGGGCTCATTGTACA CAGATGCATCGGATGGCCCGTGCTATAGTAAATCGGTAGAGTCTGTTTTACAGGACAGCAACAACAGTGC TTACTTAGAACCGAGGGTGTCAGAAGAAGAGGTAGCCAAAACATCACACTCCGGAGAAAATGAGAAATGG AAAAAATCTTTTTTGGAAAATAAGACTTCAGGAAGGATACATGAAACCAGTCCAAAAATGTTTTCAAGCC CCATCCAAATGCATCACCTCCTTGAGGAGAGAGAGGCAGATCTGGAAATGCAGACAATAAGTAGTACTGT TAATGTCATGGCTGCCAACATTCCCCAAAATAATGACATTCCGAGTCAACTGGAGAAATGGAAAGATGCT CCTGAAGTGGGGTGCCAACCTCTGCCTTTTGAGACAACCTTATTAAGGGTACGGGGTACTCAGAGGAAGA AGGAAAGAAGGAAAAAGGAGCCCAGTAGTCGTGGAAGAGTAAATGTTTTTAGTTATGGACAAGTTAAATT ATGCTCCACTGGCTTTATAACTCATGTAGTACAAAGTGAGCACGCTAAATCAACTGAAACAGAACATTCA TTTAAAAATTATGCTCGACCTGGTCCTGTAAGTGCCCAAGAAACATTTGGAAAAAGAACACACCATGCAA TTGAGACTCCAGACAGCAGTGATTTAACAAGCACTTTAAGTAAAGAATCCAGTCAACCGCCCAACAAAAG GTTTTGCAGAACAAATACAGGTTACGGGACAGAGAACAAACCTGTAGCAACAGATGACAACTTGGCTCTT TTTCAGGAAAGCTGTAAAGAATCACACACAGATCGCCTTTTGCCTGATGCATCCTCCTTCCCATGGTGTA GATATGTTTCCGATGGTTGTAGGAAAATAGATAAAAGGGGTTCCTTCAAACAGGTAGTCCGTAGGAAGCT AAGCTTGCGTTCACAAGTAGGGTCTTTAGAGAAGTTTAAGAGGCAGTATGGGAAGGTCAGCAGTTCCCTA GATACAGAAAAGGATAATAACACTGAAGTCAGGACTCATCTTGATCCTCAAAATGAACCCGATGTTCTTC TGAAAGACAAGAGCCACTTAGATATGTCTGATGGTTGTGAGATCACTACTGTGGAGCACAGTGAGACTTG TCAACCATTAAGTCCCATCCTGTACCCAGAAAAAATTTTATTTTCCAAAGAAGATCGCTTAGAACAGATG CCTCATTTGAGAGAAAGTCCTATAACTCTGGAAGAATTATCTCACTGTAACAGAAAAGCTGATGTTGAGA AGTCCGCTGCATCACTGGCTTCTAAATTATCCAAACTAAAGGATTCTGAAAAAGAGATGCAAACCGTGGG GATGACAGGTCATACTAGTGAACTTCCAGATTCAAATCCCAGTTGGAAAGATAATAGCCAGTGCACTAGG TTAGACTTGGATTTTTGTGAATTATTAAAAAACAAACTTGAAAAAATAGAGAGTGATATGCTTCCAATGG CAGATTCTGCCACAGAGGATGGTCCCATCAATAAAAACAGTGAACTACATCCTAACAATACAACGGATGA CACAGAGAAACCAGAAACTCCTTTGCTGTTCCCCTGTAATGATTCTAAAATCAGCAGAGATTCAGATGTT CTTATCAGAACTTCAGAACAACCTACAGGAAACCCTGACTCTGTCGGTAAAGTGATAATGAGTCAGGTAG AGGATGGCATTGGCAGCCAAGGTGGAGTCTGTCCCCAGGGTGATGAATCTAAGGCAAGATCTTGTTCCAA AAATGAACCAAACGCACACTGTATGGATTGGCAGCAGCATTTTGATGTAACCCTGGGAAGAATGGTTTAC ATCAACAGAATGACAGGACTTAGCACATTCGTTGCTCCAACTGACGACCTTCATACTGCTTGTACTAAAG ATCTGACAACTGTGGCTGTGGATGTCCTGCTTGGGAATGATGCTGTGGATGCTGCTGCTGCTGCTGTCAG TGAACCCCTTCAGTCTCTGTTTTCAGAATGGAGCAATCCAGTGTTTGCTCGATACCCAGAGGTTGCTGTT GATGTCAGCAGTGGCCAGGCTGAGAGCTTAGCCGTTAAAATTCACAACGTCCTGTATCCCTATCGCTTCA CCAAAGAGATGATTCACTCAGTGAAGGTTCTCCAGCAAGTGGATAACAAGTTTATTGCCTGCTTAATGAG CACGAGGATGGATGAGGATGGCCGAACAGGTGGAAACCTGTTAGTCCTGGTGGACCAGCATGCTGCCCAT GAACGCATTCGTTTGGAGCAGCTTATTACTGATTCCTATGAGAAACAAGATCCACAAAGCGCTGGCCGGA AGAAATTATTGTCTTCCACAATAATCCCTCCACTGGCAATCACCGTGTCAGAGGAACAAAGGAGACTCTT ACGGTCTTACCACAAACATTTAGAAGATCTGGGGCTTGAGTTGCTCTTTCCAGATGCTAGTGATTCTCTG ATCCTGGTGGGAAAAGTGCCGCTCTGCTTTGTAGAGAGAGAAGCTAGTGAGCTTCGAAGAGGACGCTCTA CTGTGACTAAGAGTATTGTGGAGGAATTAATTCGAGAACAAGTGGAGCTGCTCCAGACCACAGGAGGTAT CCAAGGGACACTGCCACTGACTGTCCAGAAGGTGTTGGCCTCCCAGGCCTGCCATGGGGCTATTAAGTTT AATGATCGTCTGAGCCTAGAAGAGAGCTGCCGCCTCATCGAAGCTCTGTCCTTGTCCCAGCTGCCATTTC AGTGTGCTCATGGGAGACCCTCAATGCTGCCCTTAGCTGACCTGGACCACTTGGAGCAGGAAAAACAGGT TAAACCCAACCTTGCTAAACTTCGCAAAATGGTTCGTGCCTGGCATCTCTTTGGAAAAACAGAGCAGAAC CTGCAGCAGCCTATACGTCCTTGTGAGCCTCCATGA
Translation (1411 aa): MIRCLSDDVKTKLRSGLAISSLGQCVEELTLNSIDAEATCVAIRVNMETFQVQVIDNGLGMAGDDVEKVG NRYFTSKCHSVRDLENPAFYGFRGEALASIADMAGAVEISSKKNTTLKTFVKMFQNGKALATHEADLTRP SVGTTVTVYNLFYQFPVRRKSMDPRLEFEKVRQRVEALSLMHPSISFSLRNDVSGSMVLQLPKTKDICSR FCQIYGLGKSQKLREIRFKYKEFEFSGYISSEAHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICR PKNGSASRQMNSSPRHRSASELHGIYVINVQCPFCEYDVCIEPAKTLIEFQSWDTVLICIQEGVKRFLKQ EKLFVELSGEDIKEFNEDNGFSLFGTTLQTHVSTHEKCDQSSFREACNKILDSYEMFNLQSKAVKRIATL ENKTRQNPGDSETIRKKTVGSLYTDASDGPCYSKSVESVLQDSNNSAYLEPRVSEEEVAKTSHSGENEKW KKSFLENKTSGRIHETSPKMFSSPIQMHHLLEEREADLEMQTISSTVNVMAANIPQNNDIPSQLEKWKDA PEVGCQPLPFETTLLRVRGTQRKKERRKKEPSSRGRVNVFSYGQVKLCSTGFITHVVQSEHAKSTETEHS FKNYARPGPVSAQETFGKRTHHAIETPDSSDLTSTLSKESSQPPNKRFCRTNTGYGTENKPVATDDNLAL FQESCKESHTDRLLPDASSFPWCRYVSDGCRKIDKRGSFKQVVRRKLSLRSQVGSLEKFKRQYGKVSSSL DTEKDNNTEVRTHLDPQNEPDVLLKDKSHLDMSDGCEITTVEHSETCQPLSPILYPEKILFSKEDRLEQM PHLRESPITLEELSHCNRKADVEKSAASLASKLSKLKDSEKEMQTVGMTGHTSELPDSNPSWKDNSQCTR LDLDFCELLKNKLEKIESDMLPMADSATEDGPINKNSELHPNNTTDDTEKPETPLLFPCNDSKISRDSDV LIRTSEQPTGNPDSVGKVIMSQVEDGIGSQGGVCPQGDESKARSCSKNEPNAHCMDWQQHFDVTLGRMVY INRMTGLSTFVAPTDDLHTACTKDLTTVAVDVLLGNDAVDAAAAAVSEPLQSLFSEWSNPVFARYPEVAV DVSSGQAESLAVKIHNVLYPYRFTKEMIHSVKVLQQVDNKFIACLMSTRMDEDGRTGGNLLVLVDQHAAH ERIRLEQLITDSYEKQDPQSAGRKKLLSSTIIPPLAITVSEEQRRLLRSYHKHLEDLGLELLFPDASDSL ILVGKVPLCFVEREASELRRGRSTVTKSIVEELIREQVELLQTTGGIQGTLPLTVQKVLASQACHGAIKF NDRLSLEESCRLIEALSLSQLPFQCAHGRPSMLPLADLDHLEQEKQVKPNLAKLRKMVRAWHLFGKTEQN LQQPIRPCEPP
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