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Report for CCDS26257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26257.1 Public Mus musculus 13 Vps41 23 108 98 CCDS HistoryNCBI Gene:218035Re-query CCDS DB by CCDS ID:26257.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26257.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072961.5 ENSMUSP00000072729.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072961.5Link to Ensembl Protein Viewer:ENSMUSP00000072729.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000072961Re-query CCDS DB by Protein ID:ENSMUSP00000072729
Original member Current member NCBI NM_172120.4 NP_742118.3 Accepted alive Link to Nucleotide Sequence:NM_172120.4Link to Protein Sequence:NP_742118.3Re-query CCDS DB by Nucleotide ID:NM_172120Re-query CCDS DB by Protein ID:NP_742118Link to BLAST:NP_742118.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_742118.3 853 Q5KU39 853 100% 0 0

Chromosomal Locations for CCDS 26257.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 18717316 18717336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18723188 18723226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18739442 18739546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18745262 18745339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18782647 18782721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18791587 18791649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18794327 18794392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18810432 18810551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18811567 18811713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18814227 18814293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18823780 18823877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18827604 18827733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18829223 18829338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18830737 18830793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18838652 18838713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18839648 18839729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18841158 18841250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18842153 18842280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18843469 18843613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18845308 18845349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18845887 18845937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18848886 18849023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18852341 18852395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18853347 18853487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18854525 18854661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18862537 18862636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18862738 18862782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18864033 18864112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 18866120 18866200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2562 nt):
ATGGCGGAAGCAGAGGAGCAGGAAACCGAGTCTCTTGAAGAATCTACGGATGAGTCAGAGGAAGAAAGTG
AAGAGGAACCCAAACTGAAGTATGAAAGGCTTTCCAATGGGGTGACAGAGATTCTTCAGAAGGATGCAGC
AAGCTGTATGACGGTCCATGACAAGTTTTTGGCACTGGGAACACATTATGGCAAGGTTTATTTACTTGAT
GTCCAGGGAAACATCACTCAGAAGTTTGATGTAAGTCCTGTGAAGATAAACCAAATTAGCTTGGATGACA
GTGGAGAACACATGGGAGTGTGTTCAGAGGATGGCAAGCTGCAGGTCTTTGGGCTGTATTCTGGAGAAGA
ATTTCACGAGACTTTTGACTGTCCCATTAAAATCATTGCTGTGCACCCACAGTTCGTGAGATCCAGTTGT
AAGCAGTTTGTGACTGGCGGGAAAAAGCTGCTGCTGTTTGAACGGACCTGGATGAACAGATGGAAGTCTT
CTGTGCTACACGAAGGGGAAGGAAACATAAGGAGTGTGAAGTGGAGAGGCCATCTGATTGCTTGGGCCAA
CAATATGGGTGTGAAGGTTTTTGACATCACCTCAAAGCAAAGAATCAGCAATGTGCCCCGAGATGACATA
AGTCTTCGCCCAGACATGTACCCCTGCAGCCTCTGCTGGAAGGACAATGTGACACTCATTATTGGCTGGG
GAACTTCCATCAAGATATGCTCAGTGAAGGAACGCCACGCCAGTGAGATGAGGGATCTGCCAAGCCGATA
TGTTGAGATAGTGTCTCAGTTTGAAACTGAATTCTACATTAGTGGACTTGCACCTCTCTGTGATCAGCTT
GTTGTACTTTCCTACGTAAAGGAGGTTTCAGAAAAAACGGAAAGAGAATACTGTGCAAGACCTAGACTGG
ACATCATCCAGCCACTTCCGGAGACTTGTGAAGAGATCTCCTCCGATGCTTTGACAGTCAGAGGCTTTCA
GGAGAATGAATGTAGGGATTACCACTTAGAATACTCCGAGGGGGAATCACTCTTCTATGTCGTGAGTCCA
AGAGATGTCGTCGTAGCCAAGGAACGAGACCAGGATGATCACATCGATTGGCTCCTTGAGAAGAAGAAAT
ATGAAGAAGCTTTGATGGCTGCTGAAATTAGCCAAAGGAACATTAAACGACATAAGATTCTGGATATTGG
GTTGGCATATGTAAACCACCTGGTGGAGAGAGGAGAGTACGACATGGCTGCAAGAAAATGCCAGAAAATT
CTTGGGAAAAATGCATCCCTCTGGGAATACGAAGTTTACAAATTTAAAGAAATTGGGCAGCTTAAAGCAA
TTAGTCCCTATTTACCTCGAGGGGACCCAGTTCTGAAACCACTCATCTATGAAATGATTTTGCACGAATT
TCTGGAAAGTGACTATGAGGGCTTTGCCACATTGATCAGAGAGTGGCCTGGAGATCTATATAACAATTCC
GTGATAGTTCAGGCAGTTCGAGACCACCTGAAGAAGGACAGTCAGAACAAAACGTTATTGAAAACACTGG
CAGAATTGTACACCTATGACAAAAATTATGGCAATGCTCTGGAAATATACTTAACGTTAAGACATAAAGA
TGTTTTCCAACTGATACACAAGCATAATCTTTTCAGCTCCATCAAGGATAAAATTGTGTTATTAATGGAT
TTTGATTCAGAGAAAGCTGTTGACATGCTTTTGGACAATGAAGATAAAATTTCAATTAAAAAAGTGGTAG
AAGAATTAGAAGACAGACCAGAACTGCAGCATGTGTATTTGCACAAGCTCTTCAAGAGAGACCATCATAA
GGGACAGCGCTACCATGAAAAGCAGATCAGTCTGTATGCCGAGTATGACCGACCAAACCTGCTTCCCTTT
CTCCGAGACAGTACCCATTGCCCACTTGAAAAGGCACTTGAGATCTGTCAACAAAGAAACTTTGTAGAAG
AGACAGTTTACCTTCTGAGCCGAATGGGAAACAGTAGAAGTGCCCTCAAGATGATTATGGAGGAATTGCA
TGATGTTGATAAAGCAATTGAGTTTGCCAAGGAACAAGATGATGGAGAGCTCTGGGAAGATCTGATTCTA
TACTCCATCGACAAACCACCATTTATCACTGGCTTGTTGAACAACATTGGCACACATGTGGACCCGATTC
TACTTATCCACCGAATTAAGGAAGGAATGGAGATTCCCAATTTGAGAGATTCCTTGGTTAAAATTCTGCA
AGATTATAACTTGCAGATTCTGCTTCGAGAAGGCTGCAAGAAAATCCTCGTAGCTGACTCATTGTCGTTG
CTGAAAAAAATGCACCGAACCCAAATGAAAGGCGTTCTGGTTGATGAAGAGAATATCTGTGAATCATGCC
TTTCTCCCATCCTCCCAACAGATGCAGCGAAGCCCTTCAGCGTGGTGGTCTTCCACTGCCGGCACATGTT
CCACAAGGAGTGCCTGCCTATGCCGAGCATGAATGCTCCTGCACAATACTGCAACATCTGTAGTGCTAAG
AACCGTGGGCCTGGAAGTGCCATCCTGGAGATGAAGAAGTAG

Translation (853 aa):
MAEAEEQETESLEESTDESEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLLD
VQGNITQKFDVSPVKINQISLDDSGEHMGVCSEDGKLQVFGLYSGEEFHETFDCPIKIIAVHPQFVRSSC
KQFVTGGKKLLLFERTWMNRWKSSVLHEGEGNIRSVKWRGHLIAWANNMGVKVFDITSKQRISNVPRDDI
SLRPDMYPCSLCWKDNVTLIIGWGTSIKICSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQL
VVLSYVKEVSEKTEREYCARPRLDIIQPLPETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYVVSP
RDVVVAKERDQDDHIDWLLEKKKYEEALMAAEISQRNIKRHKILDIGLAYVNHLVERGEYDMAARKCQKI
LGKNASLWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLIREWPGDLYNNS
VIVQAVRDHLKKDSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVFQLIHKHNLFSSIKDKIVLLMD
FDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISLYAEYDRPNLLPF
LRDSTHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLIL
YSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSL
LKKMHRTQMKGVLVDEENICESCLSPILPTDAAKPFSVVVFHCRHMFHKECLPMPSMNAPAQYCNICSAK
NRGPGSAILEMKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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