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Report for CCDS17495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17495.1 Public Mus musculus 3 Thbs3 23 108 98 CCDS HistoryNCBI Gene:21827Re-query CCDS DB by CCDS ID:17495.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17495.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029682.10 ENSMUSP00000029682.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029682.10Link to Ensembl Protein Viewer:ENSMUSP00000029682.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029682Re-query CCDS DB by Protein ID:ENSMUSP00000029682
Original member Current member NCBI NM_013691.3 NP_038719.2 Accepted alive Link to Nucleotide Sequence:NM_013691.3Link to Protein Sequence:NP_038719.2Re-query CCDS DB by Nucleotide ID:NM_013691Re-query CCDS DB by Protein ID:NP_038719Link to BLAST:NP_038719.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038719.2 956 Q05895 956 100% 0 0

Chromosomal Locations for CCDS 17495.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89215246 89215324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89216681 89216887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89217685 89217941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89218028 89218130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89218857 89218883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89219047 89219129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89219213 89219264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89219389 89219537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89219855 89219995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89220152 89220229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89220958 89221110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89221334 89221444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89221527 89221634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89223003 89223162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89223405 89223523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89223631 89223683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89223960 89224153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89224286 89224464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89224577 89224625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89224810 89225006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89225252 89225424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89226304 89226443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89226526 89226584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2871 nt):
ATGGAGAAGCCGGAACTTTGGGGTGTCCTGGCTCTCCTCCTCCTCTGCTCTTACACGTGTGGCAGTCAGG
ACCTTCAGGTAATTGACCTGCTGACAGTGGGCGAATCCAGGCAGATGGTAGCTGTGGCAGAGAAGATTCG
GACAGCTTTACTCACTGCTGGGGATATCTACCTCTTGTCCACTTTCCGCCTCCCTCCAAAGCAAGGTGGT
GTCCTCTTTGGCCTCTACTCTCGCCAAGACAACACACGATGGCTGGAGGCCTCTGTTGTGGGCAAGATCA
ACAAAGTGCTGGTGCGGTACCAGCGGGAAGATGGCAAAGTCCATGCAGTGAACCTACAGCAAGCAGGCCT
GGCTGATGGGCGCACACACACGGCTCTCCTGCGACTCCGAGGACCTTCTCGACCCAGCCCTGGCCTGCAG
CTGTATGTGGACTGTAAACTGGGTGACCAACATGCTGGCCTTCCAGCACTGGCCCCGATCCCTCCAGCAG
AGGTCAGTGGACTGGAGATTAGAACTGGACAAAAGGCTTATCTGAGGATGCAGGGCTTTGTGGAATCGAT
GAAAATTATTCTGGGTGGATCCATGGCTCGGGTAGGAGCCCTGAGTGAATGTCCATTCCAAGGAGACGAC
TCCATTCACAATGCAGTGACCAGCGCACTGCAATCCATTCTAGGGGAGCAGACCAAGGCATTGGTCACCC
AGCTCACCCTCTTCAACCAGATCCTAGTGGAGCTTCGGGACGACATCCGAGACCAGGTGAAGGAAATGTC
ACTCATCCGGAACACCATCATGGAGTGTCAGGTGTGCGGTTTCCACGAGCAGCGTTCACACTGCAGCCCC
AGCCCCTGCTTCCGAGGCGTGGACTGTATGGAAGTGTATGAGTACCCGGGCTATCGCTGTGGGCCCTGCC
CACCTGGCCTGCAGGGCAATGGCACCCACTGTGATGACATCAACGAGTGTGCTCACGCTGACCCCTGTTT
CCCGGGGTCCAGCTGCATCAACACCATGCCTGGCTTCCACTGCGAGGCCTGTCCTCCAGGGTACAAGGGC
ACCCGAGTGTCTGGTGTGGGCATCGACTATGCTCGAGCCAGCAAACAGGTCTGCAATGACATTGATGAAT
GTAATGATGGTAACAACGGAGGCTGTGACCCAAATTCCATCTGCACCAACACGGTGGGGTCTTTCAAATG
TGGTCCCTGCCGCCTGGGTTTCCTGGGGAACCAGAGCCAGGGCTGCGTTCCAGCAAGGACCTGCCACAGC
CCTGCCCACAGCCCCTGCCACATCCACGCCCACTGTCTCTTTGAACGCAATGGCGCTGTGTCATGCCAGT
GTAACGTGGGCTGGGCAGGGAATGGGAACGTGTGTGGGCCTGACACAGATATAGACGGCTATCCGGACCA
GGCTCTTCCCTGCATGGATAACAACAAGCACTGCAAGCAGGACAATTGCCTTTTGACACCCAACTCTGGG
CAAGAAGATGCTGATAACGATGGTGTCGGGGACCAGTGTGATGACGATGCTGACGGGGATGGTATCAAGA
ATGTGGAGGACAATTGTCGACTGTTCCCCAACAAGGACCAGCAGAATTCAGACACAGACTCGTTTGGTGA
TGCCTGCGACAACTGTCCCAATGTTCCCAACAATGACCAGAAGGACACGGATGGCAATGGAGAAGGAGAT
GCCTGTGACAACGATGTGGACGGGGATGGCATCCCCAACGGGTTGGACAATTGCCCTAAAGTACCCAACC
CACTGCAGACAGACCGGGATGAAGACGGAGTGGGAGATGCTTGCGACAGCTGCCCTGAAATGAGCAATCC
TACCCAGACAGATGCAGACAGCGACCTGGTGGGGGATGTCTGTGACACCAACGAAGACAGCGACGGAGAC
GGGCACCAGGACACCAAGGACAACTGTCCTCAGCTGCCAAATAGCTCTCAGCTGGACTCAGACAATGACG
GGCTTGGAGATGAGTGTGACGGGGACGATGACAATGACGGTGTCCCAGATTACATTCCTCCCGGGCCTGA
TAACTGTCGCCTGGTACCCAATCCTAATCAGAAGGACTCAGATGGCAACGGTGTGGGTGATGTCTGTGAA
GATGACTTTGACAATGACGCAGTGGTTGACCCTCTGGATGTGTGCCCGGAGAGTGCAGAAGTTACCCTCA
CAGACTTCCGGGCCTATCAGACTGTGATCCTGGATCCCGAGGGTGACGCCCAGATCGATCCAAACTGGGT
AGTGCTCAACCAGGGCATGGAAATTGTTCAGACTATGAACAGTGACCCGGGTCTTGCAGTTGGGTACACG
GCCTTTAATGGCGTGGACTTTGAAGGCACCTTCCACGTGAACACAGTCACTGATGATGACTATGCGGGCT
TCCTCTTCAGTTACCAGGACAGTGGCCGCTTCTATGTGGTCATGTGGAAACAGACGGAGCAGACCTACTG
GCAGGCCACGCCTTTCCGAGCAGTGGCCCAACCAGGGCTTCAGCTCAAGGCAGTGACATCCATATCTGGC
CCAGGTGAGCACCTCCGGAATGCTCTGTGGCATACTGGCCACACCCCTGATCAGGTACGACTGCTGTGGA
CTGACCCACGGAATGTGGGTTGGCGAGACAAGACATCCTATAGATGGCGGCTGCTCCACCGGCCCCAAGT
TGGCTACATTCGGGTGAAGCTCTATGAGGGTCCCCAGCTAGTGGCGGATTCTGGGGTGATTATTGACACG
TCCATGCGAGGGGGGCGTCTCGGCGTATTCTGCTTCTCCCAAGAAAACATCATTTGGTCCAATCTCCAGT
ACCGATGCAATGACACAGTGCCTGAGGACTTTGAGCCATTCCGGAGGCAGCTGCTCCAGGGAAGAGTGTG
A

Translation (956 aa):
MEKPELWGVLALLLLCSYTCGSQDLQVIDLLTVGESRQMVAVAEKIRTALLTAGDIYLLSTFRLPPKQGG
VLFGLYSRQDNTRWLEASVVGKINKVLVRYQREDGKVHAVNLQQAGLADGRTHTALLRLRGPSRPSPGLQ
LYVDCKLGDQHAGLPALAPIPPAEVSGLEIRTGQKAYLRMQGFVESMKIILGGSMARVGALSECPFQGDD
SIHNAVTSALQSILGEQTKALVTQLTLFNQILVELRDDIRDQVKEMSLIRNTIMECQVCGFHEQRSHCSP
SPCFRGVDCMEVYEYPGYRCGPCPPGLQGNGTHCDDINECAHADPCFPGSSCINTMPGFHCEACPPGYKG
TRVSGVGIDYARASKQVCNDIDECNDGNNGGCDPNSICTNTVGSFKCGPCRLGFLGNQSQGCVPARTCHS
PAHSPCHIHAHCLFERNGAVSCQCNVGWAGNGNVCGPDTDIDGYPDQALPCMDNNKHCKQDNCLLTPNSG
QEDADNDGVGDQCDDDADGDGIKNVEDNCRLFPNKDQQNSDTDSFGDACDNCPNVPNNDQKDTDGNGEGD
ACDNDVDGDGIPNGLDNCPKVPNPLQTDRDEDGVGDACDSCPEMSNPTQTDADSDLVGDVCDTNEDSDGD
GHQDTKDNCPQLPNSSQLDSDNDGLGDECDGDDDNDGVPDYIPPGPDNCRLVPNPNQKDSDGNGVGDVCE
DDFDNDAVVDPLDVCPESAEVTLTDFRAYQTVILDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYT
AFNGVDFEGTFHVNTVTDDDYAGFLFSYQDSGRFYVVMWKQTEQTYWQATPFRAVAQPGLQLKAVTSISG
PGEHLRNALWHTGHTPDQVRLLWTDPRNVGWRDKTSYRWRLLHRPQVGYIRVKLYEGPQLVADSGVIIDT
SMRGGRLGVFCFSQENIIWSNLQYRCNDTVPEDFEPFRRQLLQGRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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