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Report for CCDS56896.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56896.2 Public Mus musculus 13 Wdr41 23 108 98 CCDS HistoryNCBI Gene:218460Re-query CCDS DB by CCDS ID:56896.2See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 56896.2
This CCDS ID was updated to correctly position the short fifth coding exon, which was mis-positioned in version 1.

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 56896.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160801.7 ENSMUSP00000124033.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160801.7Link to Ensembl Protein Viewer:ENSMUSP00000124033.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160801Re-query CCDS DB by Protein ID:ENSMUSP00000124033
Original member NCBI NM_172590.3 NP_766178.2 Updated not alive Link to Nucleotide Sequence:NM_172590.3Link to Protein Sequence:NP_766178.2Re-query CCDS DB by Nucleotide ID:NM_172590Re-query CCDS DB by Protein ID:NP_766178
Current member NCBI NM_172590.4 NP_766178.2 Accepted alive Link to Nucleotide Sequence:NM_172590.4Link to Protein Sequence:NP_766178.2Re-query CCDS DB by Nucleotide ID:NM_172590Re-query CCDS DB by Protein ID:NP_766178Link to BLAST:NP_766178.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766178.2 460 Q3UDP0-1 460 100% 0 0

Chromosomal Locations for CCDS 56896.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 94976539 94976589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94978470 94978585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94995250 94995298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94997056 94997185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94999512 94999514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94999867 94999928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95005731 95005842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95008808 95008870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95010285 95010395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95015031 95015215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95017327 95017448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95018117 95018205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95018832 95018965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95021670 95021825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGCTGCGCTGGCTGATCGGAGGAGGCCGCGAGCCGCAGGGCCTAGCCGAGAAAGCTGCTTTGCAGACAA
TAGGAGAGGACCAAGGTCAGAACCCCTATACTGAACTGCTGGTACTGGAGGCTCATCGCGACATTGTCCG
CTTCCTGGTGAGGCTCGATGACTTCAGGTTTGCATCTGCTGGCGATGATGGAATTATAGTTGTGTGGAAT
GCCCAGACAGGAGAAAAACTTCTGGAACTCAGAGGACACACTCAGAAGATAACGGCTGTCATTGCGTTTC
CTCCCCTAGACTCGTGTGAGGCCAGCAGTCAGCTTCTCTTGACAGCCTCGGCTGACCGGACTGTCGGTGT
TTGGGATTGCGACACCGGCCGGCAAATCCAGAGAGTCACGTGCTTCCAGTCTACGGTAAAGTGCTTGACC
GTTCTTCAGAGACTGGACATTTGGCTGTCAGGCGGTAGTGACCTAGGCGTGTGGAACCGAAAGTTAGATC
TGCTGTGTAAAACCAGCCACCTATCCGACACAGGGATCAGTGCTTTGGTTGAAATCCCTGGGAACTGTGT
CGCCGCAGCAGTGGGCAGAGAATTGATAATTTTTAGGCTTGTGACACCCACAGAAGAATTGCCGGAATGG
GATATTATTGAAGTTAAACGCCTTCTTGATCACCAGGACAATATTCTGTCATTGGCTAACATCAATGATA
CAGGTTTCGTCACTGGCTCCCACGTTGGCGAGCTGCTCATCTGGGATGCCCTGGACTGGACTGTGCAGGC
CTGTGAGCGCACCTTCTGGAGCCCGACCGCACAGCTGGATGCCCAGCAGGAAATAAAGCTCTTCCAAAAA
CAAAATGATATTTCTATTAATCATTTCACATGCGATGAAGAGAATATATTTGCTGCAGTTGGAAGGGGGT
TATATGTGTATAACCTACAGTTGAAGCGTGTGATTGCCTGCCAGAAAACTGCACATGATTCCAACATCCT
ACACATCGATAAACTTCCAAACAGGCAGTTAATCTCATGCTCGGAAGATGGCGCTGTGCGCATGTGGGAG
GTCCGAGAAAAACAGCAGCTGGCAGCTGAGCCAGTCCCAACAGGATTTTTTAATATGTGGGGATTTGGAA
GAGTAAACAAACAGGCCAGCCAGCCTGTTAAAAAGCAGGAAGAAAACGTTACCACGTGTTCCCTGGAGCT
CATCGGAGATCTCATTGGACATTCATCGTCTGTCGAGATGTTTCTATACTTTGAGGATCATGGACTAGTG
ACATGCTCTGCAGATCATCTCATTATTTTGTGGAAAAATGGAGAGCGAGAATCTGGAGTACGCAGCTTAA
AGTTATTTCAGAAGTTAGAAGAGAACGGTGACTTATACCCAGAGTCCCCTTGA

Translation (460 aa):
MLRWLIGGGREPQGLAEKAALQTIGEDQGQNPYTELLVLEAHRDIVRFLVRLDDFRFASAGDDGIIVVWN
AQTGEKLLELRGHTQKITAVIAFPPLDSCEASSQLLLTASADRTVGVWDCDTGRQIQRVTCFQSTVKCLT
VLQRLDIWLSGGSDLGVWNRKLDLLCKTSHLSDTGISALVEIPGNCVAAAVGRELIIFRLVTPTEELPEW
DIIEVKRLLDHQDNILSLANINDTGFVTGSHVGELLIWDALDWTVQACERTFWSPTAQLDAQQEIKLFQK
QNDISINHFTCDEENIFAAVGRGLYVYNLQLKRVIACQKTAHDSNILHIDKLPNRQLISCSEDGAVRMWE
VREKQQLAAEPVPTGFFNMWGFGRVNKQASQPVKKQEENVTTCSLELIGDLIGHSSSVEMFLYFEDHGLV
TCSADHLIILWKNGERESGVRSLKLFQKLEENGDLYPESP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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