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Report for CCDS27294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27294.1 Public Mus musculus 14 Tnfsf11 23 108 98 CCDS HistoryNCBI Gene:21943Re-query CCDS DB by CCDS ID:27294.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27294.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022592.7 ENSMUSP00000022592.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022592.7Link to Ensembl Protein Viewer:ENSMUSP00000022592.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022592Re-query CCDS DB by Protein ID:ENSMUSP00000022592
Original member NCBI NM_011613.3 NP_035743.2 Updated not alive Link to Nucleotide Sequence:NM_011613.3Link to Protein Sequence:NP_035743.2Re-query CCDS DB by Nucleotide ID:NM_011613Re-query CCDS DB by Protein ID:NP_035743
Current member NCBI NM_011613.4 NP_035743.2 Accepted alive Link to Nucleotide Sequence:NM_011613.4Link to Protein Sequence:NP_035743.2Re-query CCDS DB by Nucleotide ID:NM_011613Re-query CCDS DB by Protein ID:NP_035743Link to BLAST:NP_035743.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035743.2 316 O35235-1 316 100% 0 0

Chromosomal Locations for CCDS 27294.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 78278576 78278997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 78284239 78284337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 78284420 78284465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 78299838 78299999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 78307668 78307889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGCGCCGGGCCAGCCGAGACTACGGCAAGTACCTGCGCAGCTCGGAGGAGATGGGCAGCGGCCCCGGCG
TC
CCACACGAGGGTCCGCTGCACCCCGCGCCTTCTGCACCGGCTCCGGCGCCGCCACCCGCCGCCTCCCG
C
TCCATGTTCCTGGCCCTCCTGGGGCTGGGACTGGGCCAGGTGGTCTGCAGCATCGCTCTGTTCCTGTAC
TTT
CGAGCGCAGATGGATCCTAACAGAATATCAGAAGACAGCACTCACTGCTTTTATAGAATCCTGAGAC
TC
CATGAAAACGCAGATTTGCAGGACTCGACTCTGGAGAGTGAAGACACACTACCTGACTCCTGCAGGAG
G
ATGAAACAAGCCTTTCAGGGGGCCGTGCAGAAGGAACTGCAACACATTGTGGGGCCACAGCGCTTCTCA
GGA
GCTCCAGCTATGATGGAAGGCTCATGGTTGGATGTGGCCCAGCGAGGCAAGCCTGAGGCCCAGCCAT
TT
GCACACCTCACCATCAATGCTGCCAGCATCCCATCGGGTTCCCATAAAGTCACTCTGTCCTCTTGGTA
C
CACGATCGAGGCTGGGCCAAGATCTCTAACATGACGTTAAGCAACGGAAAACTAAGGGTTAACCAAGAT
GGC
TTCTATTACCTGTACGCCAACATTTGCTTTCGGCATCATGAAACATCGGGAAGCGTACCTACAGACT
AT
CTTCAGCTGATGGTGTATGTCGTTAAAACCAGCATCAAAATCCCAAGTTCTCATAACCTGATGAAAGG
A
GGGAGCACGAAAAACTGGTCGGGCAATTCTGAATTCCACTTTTATTCCATAAATGTTGGGGGATTTTTC
AAG
CTCCGAGCTGGTGAAGAAATTAGCATTCAGGTGTCCAACCCTTCCCTGCTGGATCCGGATCAAGATG
CG
ACGTACTTTGGGGCTTTCAAAGTTCAGGACATAGACTGA


Translation (316 aa):
MRRASRDYGKYLRSSEEMGSGPGVPHEGPLHPAPSAPAPAPPPAASRSMFLALLGLGLGQVVCSIALFLY
F
RAQ
MDPNRISEDSTHCFYRILRLHENADLQDSTLESEDTLPDSCRRMKQAFQGAVQKELQHIVGPQRFS
G
AP
AMMEGSWLDVAQRGKPEAQPFAHLTINAASIPSGSHKVTLSSWYHDRGWAKISNMTLSNGKLRVNQD
G
FYYLYANICFRHHETSGSVPTDYLQLMVYVVKTSIKIPSSHNLMKGGSTKNWSGNSEFHFYSINVGGFF
K
LRAGEEISIQVSNPSLLDPDQDATYFGAFKVQDID




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser