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Report for CCDS7963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7963.1 Public Homo sapiens 11 YPEL4 24 110 108 CCDS HistoryNCBI Gene:219539Re-query CCDS DB by CCDS ID:7963.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7963.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300022.8 ENSP00000300022.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300022.8Link to Ensembl Protein Viewer:ENSP00000300022.3Re-query CCDS DB by Nucleotide ID:ENST00000300022Re-query CCDS DB by Protein ID:ENSP00000300022
Original member Current member EBI ENST00000534711.5 ENSP00000432165.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534711.5Link to Ensembl Protein Viewer:ENSP00000432165.1Re-query CCDS DB by Nucleotide ID:ENST00000534711Re-query CCDS DB by Protein ID:ENSP00000432165
Original member Current member EBI ENST00000524669.5 ENSP00000432648.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524669.5Link to Ensembl Protein Viewer:ENSP00000432648.1Re-query CCDS DB by Nucleotide ID:ENST00000524669Re-query CCDS DB by Protein ID:ENSP00000432648
Original member Current member NCBI NM_001363487.2 NP_001350416.1 Accepted alive Link to Nucleotide Sequence:NM_001363487.2Link to Protein Sequence:NP_001350416.1Re-query CCDS DB by Nucleotide ID:NM_001363487Re-query CCDS DB by Protein ID:NP_001350416Link to BLAST:NP_001350416.1
Original member Current member NCBI NM_145008.3 NP_659445.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145008.3Link to Protein Sequence:NP_659445.1Re-query CCDS DB by Nucleotide ID:NM_145008Re-query CCDS DB by Protein ID:NP_659445Link to BLAST:NP_659445.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350416.1 127 Q96NS1 127 100% 0 0
NP_659445.1 127 Q96NS1 127 100% 0 0

Chromosomal Locations for CCDS 7963.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 57645981 57646070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57646297 57646405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57646751 57646794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57646967 57647107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGCCCAGCTGTGACCCCGGTCCGGGCCCTGCCTGCCTCCCCACCAAGACTTTCCGCAGCTATCTGCCCC
GCTGTCACCGCACTTACAGCTGTGTCCACTGCCGTGCACACCTGGCCAAACACGATGAGCTTATTTCCAA
GTCCTTCCAAGGGAGCCATGGCCGAGCCTACCTGTTTAACTCCGTGGTCAACGTGGGTTGCGGGCCAGCT
GAACAGCGCCTCTTGCTCACGGGGCTCCACTCGGTAGCTGACATTTTCTGTGAGAGCTGCAAAACCACAC
TGGGCTGGAAATATGAGCAAGCTTTTGAGACGAGCCAGAAGTACAAGGAAGGGAAATACATCATTGAAAT
GTCACACATGGTGAAGGACAACGGCTGGGACTGA

Translation (127 aa):
MPSCDPGPGPACLPTKTFRSYLPRCHRTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPA
EQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKDNGWD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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