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Report for CCDS19765.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19765.1 Public Mus musculus 5 Trip6 23 108 98 CCDS HistoryNCBI Gene:22051Re-query CCDS DB by CCDS ID:19765.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19765.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024119.10 ENSMUSP00000024119.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024119.10Link to Ensembl Protein Viewer:ENSMUSP00000024119.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000024119Re-query CCDS DB by Protein ID:ENSMUSP00000024119
Original member NCBI NM_011639.3 NP_035769.1 Updated not alive Link to Nucleotide Sequence:NM_011639.3Link to Protein Sequence:NP_035769.1Re-query CCDS DB by Nucleotide ID:NM_011639Re-query CCDS DB by Protein ID:NP_035769
Current member NCBI NM_011639.4 NP_035769.1 Accepted alive Link to Nucleotide Sequence:NM_011639.4Link to Protein Sequence:NP_035769.1Re-query CCDS DB by Nucleotide ID:NM_011639Re-query CCDS DB by Protein ID:NP_035769Link to BLAST:NP_035769.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035769.1 480 Q9Z1Y4 480 100% 0 0

Chromosomal Locations for CCDS 19765.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137310043 137310174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137310285 137310405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137310653 137310831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137311874 137312043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137312140 137312233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137312706 137313089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137313351 137313476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137313581 137313708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137313960 137314068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGTCCGGGCCCACCTGGCTTCCCCCGAAGCAGCCAGAACCCTCCAGACTCCCTCAGGGGAGATCGCTGC
CCAGAGGCGCCCTGGGCCCGCCAACGGCCCACGGAGCAACACTCCAGCCTCACCCCAGGGTCAACTTTTG
CCCCCTCCCGCCTGAACACTGTTATCAGCCTCCGGGGGTACCGGAAGATCGGGGGCCTACTTGGGTGGGA
TCCCATGGAACACCCCAGCGCCTGCAGGGGCTCCCTCCAGACAGGGGGATCATCCGCCCTGGCAGTCTGG
ATGCTGAGATAGATTCGCTCACCAGCATGTTGGCTGATCTGGACGGGGGTCGCAGTCATGCACCTAGGCG
GCCAGACAGACAGGCTTTTGAGGCTCCCCCACCCCATGCTTACCGCGGAGGCTCCCTGAAGCCCAGTGGA
GGTGCTGTTCCAACCCCGATGCTCCCAGCATCCCACTATGGTGGACCTACCCCAGCCTCCTATGCTACCG
CGAGCACGCCAGCTGGCCCTGCTTTCCCTGTACAAGTGAAGGTGGCTCAACCTGTGAGAGGCTGTGGACT
GCCCAGGCGAGGGGCCTCTCAGGCCTCTGGGCCTCTTCCAGGCCCCCACTTTCCTCTGACAGGTCGTGGT
GAAGTCTGGGGGGCTGGCTATAGGAGCCACCGAGAGCCAGGACCGGGGGTTCCGGAGGGACCTTCTGGAG
TACATATCCCTGCAGGAGGAGGGAGAGGAGGTGGGCATGAGCCTCAGGGCCCCTTAGGCCAACCTCCTGA
AGAGGAACTGGAGAGACTGACCAAGAAACTGGTGCATGACATGAGCCACCCTCCCAGTGGGGAGTACTTT
GGTCGGTGTGGTGGCTGTGGCGAAGATGTGGTGGGCGATGGAGCTGGGGTTGTGGCCCTGGACCGTGTCT
TCCATATTGGTTGCTTTGTGTGTTCTACCTGTCGGGCCCAGCTCCGGGGCCAGCACTTCTATGCTGTGGA
GAGGCGGGCATATTGTGAGAGCTGCTATGTGGCCACCCTGGAGAAATGTTCCACATGCTCTGAACCCATC
CTGGACCGAATCCTGAGGGCTATGGGGAAGGCGTACCACCCTGGTTGCTTCACCTGTGTGGTATGCCACC
GTGGTCTTGATGGCATCCCGTTCACAGTGGACGCCACCAGCCAGATCCACTGCATTGAAGATTTCCACAG
GAAATTTGCCCCACGATGCTCAGTGTGTGGTGGGGCCATCATGCCGGAACCAGGTCAGGAGGAGACGGTG
AGAATTGTTGCTCTGGATCGAAGTTTCCACATCGGCTGTTACAAGTGTGAGGAGTGTGGGCTGCTGCTGT
CCTCTGAGGGAGAGTGTCAAGGCTGCTACCCGCTGGATGGGCACATCTTGTGCAAGGCTTGCAGCGCCTG
GCGTATCCAAGAGCTCTCAGCCACTGTCACCACTGATTGTTGA

Translation (480 aa):
MSGPTWLPPKQPEPSRLPQGRSLPRGALGPPTAHGATLQPHPRVNFCPLPPEHCYQPPGVPEDRGPTWVG
SHGTPQRLQGLPPDRGIIRPGSLDAEIDSLTSMLADLDGGRSHAPRRPDRQAFEAPPPHAYRGGSLKPSG
GAVPTPMLPASHYGGPTPASYATASTPAGPAFPVQVKVAQPVRGCGLPRRGASQASGPLPGPHFPLTGRG
EVWGAGYRSHREPGPGVPEGPSGVHIPAGGGRGGGHEPQGPLGQPPEEELERLTKKLVHDMSHPPSGEYF
GRCGGCGEDVVGDGAGVVALDRVFHIGCFVCSTCRAQLRGQHFYAVERRAYCESCYVATLEKCSTCSEPI
LDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFAPRCSVCGGAIMPEPGQEETV
RIVALDRSFHIGCYKCEECGLLLSSEGECQGCYPLDGHILCKACSAWRIQELSATVTTDC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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