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Report for CCDS39497.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39497.1 Public Mus musculus 6 Vopp1 23 108 98 CCDS HistoryNCBI Gene:232023Re-query CCDS DB by CCDS ID:39497.1Re-query CCDS DB by GeneID:232023See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39497.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114297.4 ENSMUSP00000109936.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114297.4Link to Ensembl Protein Viewer:ENSMUSP00000109936.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114297Re-query CCDS DB by Protein ID:ENSMUSP00000109936
Original member Current member NCBI NM_146168.1 NP_666280.1 Accepted alive Link to Nucleotide Sequence:NM_146168.1Link to Protein Sequence:NP_666280.1Re-query CCDS DB by Nucleotide ID:NM_146168Re-query CCDS DB by Protein ID:NP_666280Link to BLAST:NP_666280.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666280.1 172 Q8R1C3-1 172 100% 0 0

Chromosomal Locations for CCDS 39497.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 57754486 57754676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57762435 57762571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57774711 57774788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57789977 57790035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57824927 57824980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGGGCCGCCGGCTCGGCAGGGTGGCGGCGCTGCTGCTCGGGCTGCTAGTGGAGTGCACTGAGGCCAAAA
AACATTGCTGGTATTTTGAAGGACTCTATCCCACATACTATATATGCCGTTCCTATGAAGACTGCTGTGG
CTCCAGGTGCTGTGTGAGGGCCCTTTCCATACAGAGGCTGTGGTATTTTTGGTTCCTGCTGATGATGGGT
GTGCTGTTCTGCTGTGGTGCCGGTTTCTTCATTCGCCGGCGCATGTATCCGCCACCACTCATTGAGGAGC
CCACATTCAATGTGTCCTATACCAGGCAGCCACCAAATCCTGCTCCAGGAGCACAGCAAATGGGACCGCC
ATATTACACCGACCCTGGAGGACCCGGGATGAATCCTGTTGGCAATACCATGGCTATGGCTTTCCAGGTC
CAGCCCAATTCACCTCACGGAGGCACAACTTACCCACCCCCTCCTTCCTACTGCAACACGCCTCCACCCC
CCTATGAACAGGTGGTGAAGGACAAGTAG

Translation (172 aa):
MGRRLGRVAALLLGLLVECTEAKKHCWYFEGLYPTYYICRSYEDCCGSRCCVRALSIQRLWYFWFLLMMG
VLFCCGAGFFIRRRMYPPPLIEEPTFNVSYTRQPPNPAPGAQQMGPPYYTDPGGPGMNPVGNTMAMAFQV
QPNSPHGGTTYPPPPSYCNTPPPPYEQVVKDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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