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Report for CCDS16287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16287.1 Public Mus musculus 2 Or12e8 23 108 98 CCDS HistoryNCBI Gene:259031Re-query CCDS DB by CCDS ID:16287.1Re-query CCDS DB by GeneID:259031See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16287.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058737.4 ENSMUSP00000051931.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058737.4Link to Ensembl Protein Viewer:ENSMUSP00000051931.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000058737Re-query CCDS DB by Protein ID:ENSMUSP00000051931
Original member Current member EBI ENSMUST00000215163.2 ENSMUSP00000149911.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215163.2Link to Ensembl Protein Viewer:ENSMUSP00000149911.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000215163Re-query CCDS DB by Protein ID:ENSMUSP00000149911
Original member Current member NCBI NM_147029.1 NP_667240.1 Accepted alive Link to Nucleotide Sequence:NM_147029.1Link to Protein Sequence:NP_667240.1Re-query CCDS DB by Nucleotide ID:NM_147029Re-query CCDS DB by Protein ID:NP_667240Link to BLAST:NP_667240.1

Chromosomal Locations for CCDS 16287.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87357446 87358390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGAACACTCAGAGAACAGTGCCATGGATAATGCAACCTCAGTGACACAGTTTCTCTTACTGGGGTTCT
CTGGCGTACCTAACCTGCAAACATTTCTGTTTGGGATGTTTTCCATAATGTATGTGGTTATCTTAATAGG
AAACACCTCTATACTTGTTATAGCAAGAATTGATCCTGCACTACAAAAACCCATGTATTATTTCCTGGCC
AATTTTTCATTTCTGGAAATTTGTTATGTATCAGTCACCCTTCCCCGCATTCTCTACAATCTTTGGACAC
AAGACAGAGGAATTTGTCTCCTGGCCTGTGCTATTCAAATGTTTTTCTTCCTAATTCTGGCAGCCACTGA
GTGTTTTCTTCTGGCTGTGATGTCCTATGACCGCTATGTGGCCATCTGCAACCCTCTGCACTATCCTCTG
GTCATGAATCCAACAAAGTGCACTCAGCTGGCTGTGGGCTCTTGGCTCGGTGGTATCCCAGTCCAGATAG
GACAAACTTGTCGAATATTCTCTCTACATTTCTGCAATTCTAATATAATAGAGCACTTCTTCTGTGATGT
TCCCCCAATTCTCAAGCTGGCCTGTGGGGACACTTCAATGCATGAGTTGTCTGTATACTTAGTGGCTATG
TTTTTTGTTGCCTCTCCTTTTATGTTAATACTTGCTTCCTACAGCAAAATCATTGCTACCATTCTAAAGT
TGCCAACAGCCACAGGACGGGCAAAAGCTTTCTCCACTTGTTCTTCACATCTGGTGGTAGTGCTTTTATT
TTTTGGATCAGCTACCATTAACTACTTGAGGCCAAAGTCCATTCATTCTGTAGGAACTGATGAACTACTC
TCTCTGTTTTACACAATTGTGACCCCCATGTTCAATCCCCTAATATACAGCCTCAGAAACAAGGATGTGA
TTGCAGCATTAAGAAGGCTTTTACTTAAAATTTAG

Translation (314 aa):
MEHSENSAMDNATSVTQFLLLGFSGVPNLQTFLFGMFSIMYVVILIGNTSILVIARIDPALQKPMYYFLA
NFSFLEICYVSVTLPRILYNLWTQDRGICLLACAIQMFFFLILAATECFLLAVMSYDRYVAICNPLHYPL
VMNPTKCTQLAVGSWLGGIPVQIGQTCRIFSLHFCNSNIIEHFFCDVPPILKLACGDTSMHELSVYLVAM
FFVASPFMLILASYSKIIATILKLPTATGRAKAFSTCSSHLVVVLLFFGSATINYLRPKSIHSVGTDELL
SLFYTIVTPMFNPLIYSLRNKDVIAALRRLLLKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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