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Report for CCDS4491.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
4491.2 |
Public |
Homo sapiens |
6 |
CDYL |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:9425](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:4491.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:9425](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 6 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 4491.1 |
The coding region has been updated to represent an alternative splice pattern that is more supported by the available transcript and protein data. |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 4491.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000397588.8 |
ENSP00000380718.3 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000397588.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000380718.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000397588](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000380718](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_004824.4 |
NP_004815.3 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_004824.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_004815.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_004824](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_004815](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_004815.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_004815.3 |
544 |
Q9Y232-2 |
544 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 4491.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1635 nt): ATGGCTTCCGAGGAGCTGTACGAGGTTGAAAGGATTGTTGACAAAAGGAAAAATAAAAAAGGGAAGACAG AGTATTTGGTTCGGTGGAAAGGCTATGACAGCGAGGACGACACTTGGGAGCCGGAACAGCACCTCGTGAA CTGTGAGGAATACATCCACGACTTCAACAGACGCCACACGGAGAAGCAGAAGGAGAGCACATTGACCAGA ACAAACAGGACCTCTCCCAACAATGCTAGGAAACAAATCTCCAGATCCACCAACAGCAACTTTTCTAAGA CCTCTCCTAAGGCACTCGTGATTGGGAAAGACCACGAATCCAAAAACAGCCAGCTGTTTGCTGCCAGCCA GAAGTTCAGGAAGAACACAGCTCCATCTCTCTCCAGCCGGAAGAACATGGACCTAGCGAAGTCAGGTATC AAGATCCTCGTGCCTAAAAGCCCCGTTAAGAGCAGGACCGCAGTGGACGGCTTTCAGAGCGAGAGCCCTG AGAAACTGGACCCCGTCGAGCAGGGTCAGGAGGACACAGTGGCACCCGAAGTGGCAGCGGAAAAGCCGGT CGGAGCTTTATTGGGCCCCGGTGCCGAGAGGGCCAGGATGGGGAGCAGGCCCAGGATACACCCACTAGTG CCTCAGGTGCCCGGCCCTGTGACTGCAGCCATGGCCACAGGCTTAGCTGTTAACGGGAAAGGTACATCTC CGTTCATGGATGCATTAACAGCCAATGGGACAACCAACATACAGACATCTGTTACAGGAGTGACTGCCAG CAAAAGGAAATTTATTGACGACAGAAGAGACCAGCCTTTTGACAAGCGATTGCGTTTCAGCGTGAGGCAA ACAGAAAGTGCCTACAGATACAGAGATATTGTGGTCAGGAAGCAGGATGGCTTCACCCACATCTTGTTAT CCACAAAGTCCTCAGAGAATAACTCACTAAATCCAGAGGTAATGAGAGAAGTCCAGAGTGCTCTGAGCAC GGCCGCTGCCGATGACAGCAAGCTGGTACTGCTCAGCGCCGTTGGCAGCGTCTTCTGTTGTGGACTTGAC TTTATTTATTTTATACGACGTCTGACAGATGACAGGAAAAGAGAAAGCACTAAAATGGCAGAAGCTATCA GAAACTTCGTGAATACTTTCATTCAATTTAAGAAGCCCATTATTGTAGCAGTCAATGGCCCAGCCATTGG TCTAGGAGCATCTATATTGCCTCTTTGCGATGTGGTTTGGGCTAATGAAAAGGCTTGGTTTCAAACACCC TATACCACCTTCGGACAGAGTCCAGATGGCTGTTCTACCGTTATGTTTCCCAAGATAATGGGAGGAGCAT CTGCAAACGAGATGCTGCTCAGTGGACGGAAGCTGACAGCGCAGGAGGCGTGTGGCAAGGGCCTGGTCTC CCAGGTGTTTTGGCCCGGGACGTTCACTCAGGAAGTGATGGTTCGCATTAAGGAGCTTGCCTCGTGCAAT CCAGTTGTGCTTGAGGAATCCAAAGCCCTCGTGCGCTGCAACATGAAGATGGAGCTGGAGCAGGCCAACG AGAGGGAGTGTGAGGTGCTGAAGAAAATCTGGGGCTCGGCCCAGGGGATGGACTCCATGTTAAAGTACTT GCAGAGGAAGATCGATGAGTTCTGA
Translation (544 aa): MASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQKESTLTR TNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFRKNTAPSLSSRKNMDLAKSGI KILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPEVAAEKPVGALLGPGAERARMGSRPRIHPLV PQVPGPVTAAMATGLAVNGKGTSPFMDALTANGTTNIQTSVTGVTASKRKFIDDRRDQPFDKRLRFSVRQ TESAYRYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLD FIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTP YTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCN PVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF
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