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Report for CCDS4829.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4829.1 Public Homo sapiens 6 FGD2 24 110 108 CCDS HistoryNCBI Gene:221472Re-query CCDS DB by CCDS ID:4829.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4829.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274963.13 ENSP00000274963.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274963.13Link to Ensembl Protein Viewer:ENSP00000274963.8Re-query CCDS DB by Nucleotide ID:ENST00000274963Re-query CCDS DB by Protein ID:ENSP00000274963
Original member Current member NCBI NM_173558.4 NP_775829.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173558.4Link to Protein Sequence:NP_775829.2Re-query CCDS DB by Nucleotide ID:NM_173558Re-query CCDS DB by Protein ID:NP_775829Link to BLAST:NP_775829.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775829.2 655 Q7Z6J4-1 655 100% 0 0

Chromosomal Locations for CCDS 4829.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 37005818 37005885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37008834 37009065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37010973 37011050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37011706 37011854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37013609 37013765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37013962 37014100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37014646 37014704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37014892 37015038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37015768 37015860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37020541 37020620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37020709 37020739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37021512 37021604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37022239 37022370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37025792 37025938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37027429 37027575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37027948 37028163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1968 nt):
ATGAAGGGGGCAAGTGAGGAGAAGCTGGCATCTGTGTCCAACCTGGTCACTGTGTTTGAGAATAGCAGGA
CCCCAGAAGCAGCACCCAGAGGCCAGAGGCTAGAGGACGTGCATCACCGCCCTGAGTGCAGGCCTCCCGA
GTCCCCAGGACCACGGGAGAAGACGAATGTCGGGGAGGCCGTGGGGTCTGAGCCCAGGACAGTCAGCAGG
AGGTACCTGAACTCCCTGAAGAACAAGCTGTCCAGCGAAGCCTGGAGGAAATCTTGCCAGCCTGTGACCC
TCTCAGGATCGGGGACGCAGGAGCCAGAGAAGAAGATCGTCCAGGAGCTGCTGGAGACAGAGCAGGCCTA
TGTGGCGCGCCTCCACCTGCTAGACCAGGTGTTTTTCCAGGAGCTGCTGAAGACAGCCCGCAGCAGCAAG
GCCTTCCCAGAGGATGTGGTCAGGGTCATCTTCTCCAACATCTCCTCCATCTATCAGTTCCATTCTCAGT
TCTTCCTCCCAGAGCTGCAGCGGCGCCTGGACGACTGGACAGCTAACCCCCGCATCGGTGACGTGATCCA
GAAGCTGGCCCCCTTCCTGAAGATGTACAGTGAGTATGTCAAGAACTTTGAGCGAGCGGCTGAGCTGCTG
GCCACCTGGACCGACAAGTCTCCACTCTTCCAGGAGGTTCTCACTCGCATCCAGAGCAGCGAGGCTTCGG
GCAGCCTGACCCTGCAGCACCACATGCTGGAACCAGTGCAGAGAATTCCACGTTACGAGCTGCTGCTCAA
GGAGTACATCCAGAAGCTGCCAGCCCAGGCCCCAGACCAGGCCGATGCCCAGAAAGCCCTGGACATGATC
TTCTCAGCTGCCCAGCACTCCAATGCAGCCATCACTGAGATGGAGCGGCTGCAGGACCTGTGGGAGGTGT
ACCAGCGCCTGGGCCTCGAGGACGACATAGTAGACCCCTCTAACACCCTGCTCCGTGAGGGCCCGGTCCT
CAAGATCTCCTTCCGCCGCAACGACCCCATGGAGCGCTACCTTTTCTTGTTCAACAACATGCTGCTCTAC
TGTGTGCCCAGGGTGATCCAGGTGGGCGCCCAGTTCCAGGTGAGGACCCGCATCGATGTGGCCGGGATGA
AGGTGCGGGAGCTGATGGATGCTGAGTTTCCCCACTCCTTCCTGGTGTCCGGGAAGCAGCGCACCCTGGA
GCTGCAAGCCCGGTCCCAGGAGGAAATGATTTCCTGGATGCAGGCCTTCCAAGCAGCCATTGACCAAATC
GAGAAGCGGAATGAAACCTTCAAGGCTGCGGCCCAGGGGCCTGAGGGAGACATCCAGGAGCAGGAGCTGC
AGTCTGAGGAGCTGGGCCTCCGGGCACCGCAGTGGGTCCGGGACAAGATGGTGACCATGTGCATGCGCTG
CCAGGAGCCCTTCAACGCTCTGACGCGCCGTCGCCACCACTGCCGGGCCTGCGGCTATGTGGTGTGTGCC
AGGTGCTCCGACTACCGGGCCGAACTGAAATACGACGACAACAGGCCCAACCGAGTCTGCCTCCACTGCT
ACGCATTCCTCACTGGAAATGTGCTGCCTGAGGCCAAGGAGGACAAGAGGCGGGGCATCCTGGAGAAAGG
GTCCTCAGCCACGCCTGACCAGAGCCTGATGTGCAGCTTCCTGCAGCTCATCGGGGACAAGTGGGGCAAG
AGCGGCCCCCGGGGCTGGTGTGTGATCCCTCGGGATGACCCCCTCGTGCTCTATGTCTATGCTGCCCCTC
AGGACATGAGGGCTCACACCTCCATCCCCCTGCTGGGCTACCAGGTGACTGTTGGGCCCCAGGGGGACCC
TCGGGTCTTCCAGCTACAGCAGTCAGGCCAGCTCTACACCTTCAAGGCCGAGACGGAGGAGCTGAAGGGC
CGCTGGGTGAAGGCCATGGAGCGGGCGGCCAGTGGCTGGAGCCCCAGCTGGCCCAACGATGGGGACCTGT
CCGACTGA

Translation (655 aa):
MKGASEEKLASVSNLVTVFENSRTPEAAPRGQRLEDVHHRPECRPPESPGPREKTNVGEAVGSEPRTVSR
RYLNSLKNKLSSEAWRKSCQPVTLSGSGTQEPEKKIVQELLETEQAYVARLHLLDQVFFQELLKTARSSK
AFPEDVVRVIFSNISSIYQFHSQFFLPELQRRLDDWTANPRIGDVIQKLAPFLKMYSEYVKNFERAAELL
ATWTDKSPLFQEVLTRIQSSEASGSLTLQHHMLEPVQRIPRYELLLKEYIQKLPAQAPDQADAQKALDMI
FSAAQHSNAAITEMERLQDLWEVYQRLGLEDDIVDPSNTLLREGPVLKISFRRNDPMERYLFLFNNMLLY
CVPRVIQVGAQFQVRTRIDVAGMKVRELMDAEFPHSFLVSGKQRTLELQARSQEEMISWMQAFQAAIDQI
EKRNETFKAAAQGPEGDIQEQELQSEELGLRAPQWVRDKMVTMCMRCQEPFNALTRRRHHCRACGYVVCA
RCSDYRAELKYDDNRPNRVCLHCYAFLTGNVLPEAKEDKRRGILEKGSSATPDQSLMCSFLQLIGDKWGK
SGPRGWCVIPRDDPLVLYVYAAPQDMRAHTSIPLLGYQVTVGPQGDPRVFQLQQSGQLYTFKAETEELKG
RWVKAMERAASGWSPSWPNDGDLSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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