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Report for CCDS34440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34440.1 Public Homo sapiens 6 PI16 24 110 108 CCDS HistoryNCBI Gene:221476Re-query CCDS DB by CCDS ID:34440.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34440.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373674.4 ENSP00000362778.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373674.4Link to Ensembl Protein Viewer:ENSP00000362778.3Re-query CCDS DB by Nucleotide ID:ENST00000373674Re-query CCDS DB by Protein ID:ENSP00000362778
Original member Current member EBI ENST00000611814.4 ENSP00000478888.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611814.4Link to Ensembl Protein Viewer:ENSP00000478888.1Re-query CCDS DB by Nucleotide ID:ENST00000611814Re-query CCDS DB by Protein ID:ENSP00000478888
Original member Current member EBI ENST00000647861.1 ENSP00000497550.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647861.1Link to Ensembl Protein Viewer:ENSP00000497550.1Re-query CCDS DB by Nucleotide ID:ENST00000647861Re-query CCDS DB by Protein ID:ENSP00000497550
Original member Current member NCBI NM_001199159.2 NP_001186088.1 Accepted alive Link to Nucleotide Sequence:NM_001199159.2Link to Protein Sequence:NP_001186088.1Re-query CCDS DB by Nucleotide ID:NM_001199159Re-query CCDS DB by Protein ID:NP_001186088Link to BLAST:NP_001186088.1
Original member Current member NCBI NM_153370.3 NP_699201.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153370.3Link to Protein Sequence:NP_699201.2Re-query CCDS DB by Nucleotide ID:NM_153370Re-query CCDS DB by Protein ID:NP_699201Link to BLAST:NP_699201.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186088.1 463 Q6UXB8-1 463 100% 0 0
NP_699201.2 463 Q6UXB8-1 463 100% 0 0

Chromosomal Locations for CCDS 34440.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 36954761 36954931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36959145 36959366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36961451 36961560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36961886 36961974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36962935 36963612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36963823 36963944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGCACGGCTCCTGCAGTTTCCTGATGCTTCTGCTGCCGCTACTGCTACTGCTGGTGGCCACCACAGGCC
CCGTTGGAGCCCTCACAGATGAGGAGAAACGTTTGATGGTGGAGCTGCACAACCTCTACCGGGCCCAGGT
ATCCCCGACGGCCTCAGACATGCTGCACATGAGATGGGACGAGGAGCTGGCCGCCTTCGCCAAGGCCTAC
GCACGGCAGTGCGTGTGGGGCCACAACAAGGAGCGCGGGCGCCGCGGCGAGAATCTGTTCGCCATCACAG
ACGAGGGCATGGACGTGCCGCTGGCCATGGAGGAGTGGCACCACGAGCGTGAGCACTACAACCTCAGCGC
CGCCACCTGCAGCCCAGGCCAGATGTGCGGCCACTACACGCAGGTGGTATGGGCCAAGACAGAGAGGATC
GGCTGTGGTTCCCACTTCTGTGAGAAGCTCCAGGGTGTTGAGGAGACCAACATCGAATTACTGGTGTGCA
ACTATGAGCCTCCGGGGAACGTGAAGGGGAAACGGCCCTACCAGGAGGGGACTCCGTGCTCCCAATGTCC
CTCTGGCTACCACTGCAAGAACTCCCTCTGTGAACCCATCGGAAGCCCGGAAGATGCTCAGGATTTGCCT
TACCTGGTAACTGAGGCCCCATCCTTCCGGGCGACTGAAGCATCAGACTCTAGGAAAATGGGTACTCCTT
CTTCCCTAGCAACGGGGATTCCGGCTTTCTTGGTAACAGAGGTCTCAGGCTCCCTGGCAACCAAGGCTCT
GCCTGCTGTGGAAACCCAGGCCCCAACTTCCTTAGCAACGAAAGACCCGCCCTCCATGGCAACAGAGGCT
CCACCTTGCGTAACAACTGAGGTCCCTTCCATTTTGGCAGCTCACAGCCTGCCCTCCTTGGATGAGGAGC
CAGTTACCTTCCCCAAATCGACCCATGTTCCTATCCCAAAATCAGCAGACAAAGTGACAGACAAAACAAA
AGTGCCCTCTAGGAGCCCAGAGAACTCTCTGGACCCCAAGATGTCCCTGACAGGGGCAAGGGAACTCCTA
CCCCATGCCCAGGAGGAGGCTGAGGCTGAGGCTGAGTTGCCTCCTTCCAGTGAGGTCTTGGCCTCAGTTT
TTCCAGCCCAGGACAAGCCAGGTGAGCTGCAGGCCACACTGGACCACACGGGGCACACCTCCTCCAAGTC
CCTGCCCAATTTCCCCAATACCTCTGCCACCGCTAATGCCACGGGTGGGCGTGCCCTGGCTCTGCAGTCG
TCCTTGCCAGGTGCAGAGGGCCCTGACAAGCCTAGCGTCGTGTCAGGGCTGAACTCGGGCCCTGGTCATG
TGTGGGGCCCTCTCCTGGGACTACTGCTCCTGCCTCCTCTGGTGTTGGCTGGAATCTTCTGA

Translation (463 aa):
MHGSCSFLMLLLPLLLLLVATTGPVGALTDEEKRLMVELHNLYRAQVSPTASDMLHMRWDEELAAFAKAY
ARQCVWGHNKERGRRGENLFAITDEGMDVPLAMEEWHHEREHYNLSAATCSPGQMCGHYTQVVWAKTERI
GCGSHFCEKLQGVEETNIELLVCNYEPPGNVKGKRPYQEGTPCSQCPSGYHCKNSLCEPIGSPEDAQDLP
YLVTEAPSFRATEASDSRKMGTPSSLATGIPAFLVTEVSGSLATKALPAVETQAPTSLATKDPPSMATEA
PPCVTTEVPSILAAHSLPSLDEEPVTFPKSTHVPIPKSADKVTDKTKVPSRSPENSLDPKMSLTGARELL
PHAQEEAEAEAELPPSSEVLASVFPAQDKPGELQATLDHTGHTSSKSLPNFPNTSATANATGGRALALQS
SLPGAEGPDKPSVVSGLNSGPGHVWGPLLGLLLLPPLVLAGIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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