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Report for CCDS28706.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28706.1 Public Mus musculus 17 Tubb5 23 108 98 CCDS HistoryNCBI Gene:22154Re-query CCDS DB by CCDS ID:28706.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28706.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001566.9 ENSMUSP00000001566.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001566.9Link to Ensembl Protein Viewer:ENSMUSP00000001566.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000001566Re-query CCDS DB by Protein ID:ENSMUSP00000001566
Original member Current member NCBI NM_011655.5 NP_035785.1 Accepted alive Link to Nucleotide Sequence:NM_011655.5Link to Protein Sequence:NP_035785.1Re-query CCDS DB by Nucleotide ID:NM_011655Re-query CCDS DB by Protein ID:NP_035785Link to BLAST:NP_035785.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035785.1 444 P99024 444 100% 0 0

Chromosomal Locations for CCDS 28706.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35834982 35836039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35836163 35836273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35836628 35836736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35837997 35838053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGAGGGAAATCGTGCACATCCAGGCCGGACAGTGTGGCAACCAGATCGGTGCTAAGTTCTGGGAGGTGA
TAAGCGATGAACATGGCATCGACCCCACCGGTACCTACCACGGTGACAGCGACCTGCAGCTGGACCGAAT
CTCTGTGTACTATAATGAAGCCACAGGTGGCAAGTATGTCCCTCGAGCTATCTTGGTGGATCTAGAACCT
GGGACTATGGACTCCGTTCGCTCAGGTCCTTTTGGCCAGATCTTCAGACCAGACAACTTCGTTTTCGGTC
AGTCTGGGGCAGGCAACAACTGGGCTAAAGGCCACTACACAGAGGGAGCTGAGTTGGTTGACTCTGTCTT
GGATGTGGTGCGGAAGGAGGCGGAGAGCTGTGATTGCCTGCAAGGCTTTCAGCTGACCCACTCACTGGGT
GGAGGCACTGGCTCTGGCATGGGCACCCTGCTCATCAGCAAGATCCGGGAAGAATATCCTGACCGTATCA
TGAATACCTTCAGTGTGGTGCCCTCGCCCAAAGTGTCTGATACCGTGGTCGAGCCCTACAATGCCACCCT
GTCTGTCCATCAGTTGGTTGAGAACACGGATGAGACCTACTGCATCGACAACGAGGCCCTCTACGACATC
TGCTTCCGTACCCTCAAGCTCACCACGCCAACCTACGGAGACCTGAACCATCTCGTCTCGGCCACCATGA
GCGGCGTCACCACCTGCCTCCGTTTCCCGGGCCAGCTTAATGCTGACCTTCGAAAGCTGGCTGTCAACAT
GGTGCCATTCCCACGTCTCCACTTCTTCATGCCTGGCTTTGCCCCTCTCACCAGCCGTGGAAGCCAGCAG
TACCGGGCCCTCACTGTGCCTGAACTTACCCAGCAGGTCTTCGATGCCAAGAACATGATGGCCGCCTGCG
ACCCGCGCCACGGCCGGTACCTCACAGTTGCCGCCGTCTTCCGTGGACGGATGTCCATGAAGGAGGTGGA
TGAGCAGATGCTCAACGTGCAGAACAAGAATAGCAGCTACTTCGTGGAATGGATCCCCAACAATGTCAAG
ACAGCTGTCTGTGACATCCCACCGCGTGGCCTCAAGATGGCAGTCACCTTCATTGGAAACAGCACAGCCA
TCCAGGAGCTCTTCAAGCGCATCTCTGAGCAGTTTACGGCTATGTTCCGCCGGAAGGCTTTCCTCCACTG
GTATACGGGTGAGGGCATGGACGAGATGGAGTTCACCGAAGCTGAGAGCAACATGAACGACCTCGTCTCT
GAGTACCAGCAGTACCAGGATGCCACCGCGGAAGAGGAAGAGGATTTCGGAGAGGAGGCAGAAGAGGAGG
CCTAA

Translation (444 aa):
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEP
GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLG
GGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQ
YRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVK
TAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
EYQQYQDATAEEEEDFGEEAEEEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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