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Report for CCDS21118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21118.1 Public Mus musculus 7 Usf2 23 108 98 CCDS HistoryNCBI Gene:22282Re-query CCDS DB by CCDS ID:21118.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21118.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058860.13 ENSMUSP00000132256.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058860.13Link to Ensembl Protein Viewer:ENSMUSP00000132256.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000058860Re-query CCDS DB by Protein ID:ENSMUSP00000132256
Original member NCBI NM_011680.2 NP_035810.1 Updated not alive Link to Nucleotide Sequence:NM_011680.2Link to Protein Sequence:NP_035810.1Re-query CCDS DB by Nucleotide ID:NM_011680Re-query CCDS DB by Protein ID:NP_035810
Current member NCBI NM_011680.3 NP_035810.1 Accepted alive Link to Nucleotide Sequence:NM_011680.3Link to Protein Sequence:NP_035810.1Re-query CCDS DB by Nucleotide ID:NM_011680Re-query CCDS DB by Protein ID:NP_035810Link to BLAST:NP_035810.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035810.1 346 Q64705-1 346 100% 0 0

Chromosomal Locations for CCDS 21118.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30946580 30946669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30946751 30946879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30946965 30947059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30954744 30954802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30955106 30955193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30955290 30955440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30955800 30956000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30956149 30956267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30956382 30956428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30956696 30956757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGACATGCTGGACCCGGGTCTGGATCCCGCTTCCTCGGCCACCGCTGCTGCCGCCGCCAGCCACGACA
AGGGACCCGAGGCCGAGGAGGGCGTTGAGCTGCAGGAAGGCGGGGACGGCCCGGGGGCTGAGGAGCAGAC
GGCGGTGGCCATCGCCAGTGTCCAGCAGGCGGCGTTCGGCGACCACAATATCCAGTACCAGTTCCGTACA
GAGAGTAATGGAGGCCAGGTGACATACCGCGTAGTCCAGGTGACTGATGGTCAGCTGGACGGCCAGGGCG
ACGCGGCCGGCGCCGTCAGCGTCGTGTCCACCGCTGCCTTCGCGGGGGGGCAGCAGGCTGTGACCCAGGT
GGGTGTGGACGGGGCAGCCCAGCGCCCCGGCCCTGCCGCTGCCTCTGTACCCACAGGTCCCGCAGCACCC
TTCCCGCTGGCTGTAATTCAAAATCCATTCAGCAATGGTGGCAGCCCGGCGGCCGAAGCTGTCAGCGGGG
AGGCACGATTTGCTTATTTTCCAGCATCCAGTGTGGGCGATACCACAGCTGTGTCTGTTCAAACTACAGA
CCAGAGCCTACAGGCCGGAGGCCAGTTCTATGTCATGATGACACCCCAGGATGTGCTTCAGACAGGCACA
CAGAGGACAATTGCACCCCGGACACACCCCTATTCTCCGAAAATTGATGGAACCAGAACTCCTCGAGATG
AGAGAAGAAGAGCTCAGCACAATGAAGTGGAACGGAGAAGGAGGGACAAGATCAACAACTGGATCGTCCA
GCTTTCCAAAATCATTCCAGATTGTCATGCAGACAACAGCAAGACAGGAGCAAGTAAAGGGGGCATCCTG
TCCAAGGCTTGCGATTACATCCGGGAGCTACGCCAGACCAACCAGCGCATGCAGGAGACCTTCAAGGAGG
CAGAGCGGCTGCAGATGGACAATGAGCTCCTCAGGCAGCAGATCGAGGAGCTGAAGAATGAGAATGCCCT
GCTTCGAGCCCAGCTACAGCAGCACAACCTGGAAATGGTGGGCGAGAGTACCCGGCAGTGA

Translation (346 aa):
MDMLDPGLDPASSATAAAAASHDKGPEAEEGVELQEGGDGPGAEEQTAVAIASVQQAAFGDHNIQYQFRT
ESNGGQVTYRVVQVTDGQLDGQGDAAGAVSVVSTAAFAGGQQAVTQVGVDGAAQRPGPAAASVPTGPAAP
FPLAVIQNPFSNGGSPAAEAVSGEARFAYFPASSVGDTTAVSVQTTDQSLQAGGQFYVMMTPQDVLQTGT
QRTIAPRTHPYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCHADNSKTGASKGGIL
SKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHNLEMVGESTRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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