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Report for CCDS46802.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46802.1 Public Homo sapiens 3 ZNF619 24 110 108 CCDS HistoryNCBI Gene:285267Re-query CCDS DB by CCDS ID:46802.1Re-query CCDS DB by GeneID:285267See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 46802.1
This CCDS representation is supported by the splicing pattern of BC143332.1. It should be noted that this mRNA is 5' partial and does not encode the first 4 aa of the protein. Therefore, this representation includes a 5' extension based on other transcript data at this locus. This extension completes an N-terminal KRAB box, as found in many other zinc finger proteins.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46802.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000447116.6 ENSP00000411132.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447116.6Link to Ensembl Protein Viewer:ENSP00000411132.2Re-query CCDS DB by Nucleotide ID:ENST00000447116Re-query CCDS DB by Protein ID:ENSP00000411132
Original member Current member EBI ENST00000521353.5 ENSP00000430705.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000521353.5Link to Ensembl Protein Viewer:ENSP00000430705.1Re-query CCDS DB by Nucleotide ID:ENST00000521353Re-query CCDS DB by Protein ID:ENSP00000430705
Original member Current member NCBI NM_001145082.4 NP_001138554.1 Accepted alive Link to Nucleotide Sequence:NM_001145082.4Link to Protein Sequence:NP_001138554.1Re-query CCDS DB by Nucleotide ID:NM_001145082Re-query CCDS DB by Protein ID:NP_001138554Link to BLAST:NP_001138554.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138554.1 616 Q8N2I2-4 616 100% 0 0

Chromosomal Locations for CCDS 46802.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 40477980 40478003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40481863 40482016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40482230 40482349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40482588 40482704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40486806 40488241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1851 nt):
ATGCTCCAGACAGTGTGGTTCCAGGGCTTGGGCAGGAACCTGTTGTTTCAGGAGCCAGTAACCTTTGAGG
ATGTGGCTGTGTACTTCACCCAGAATGAATGGGCCAGCCTGCACCCTACGCAGAGGGCCCTATACAGGGA
GGTGATGCTGGAGAATTATGCAAATGTGACTTCCTTGTACCCAACTGCAGGGGGCTTTCCTCTGGATACA
GAGAGAACTGAGAAGGTTCCTGGTGCACTGTCTTCATTCCTTCCATCTTCCAGTTCCCTGGAGCTGATCT
TGGCCCTATTGCCTATGTCAGCATTTCCATTCCCCAAACCAGATCTGATATTCCAGCTGGAGCAAGGAGA
AGCAGCATGGGGCCCAGATCCCTGGACACTTGCTGGGGGAGAGGCCCTGAGAGGCATGTGCACAGGTGGT
AAAACCAAGACTGAGAATGAGGAAAAAACTGCACAGCTAAACATTTCTAAAGAATCAGAGTCCCACAGAC
TGATAGTGGAGGGACTGCTGATGGACGTTCCCCAGCACCCTGACTTCAAGGACAGGTTAGAGAAGTCACA
GCTACATGATACAGGGAATAAAACAAAGATAGGGGATTGCACAGATTTGACAGTCCAGGATCATGAATCT
TCCACCACTGAAAGGGAGGAGATAGCCAGGAAATTGGAAGAAAGTAGTGTCAGCACACATCTCATTACAA
AGCAGGGTTTTGCCAAAGAACAGGTGTTTTATAAATGTGGTGAGTGTGGCAGTTACTACAACCCACATTC
AGACTTTCACCTGCATCAGAGAGTTCACACTAATGAGAAGCCCTACACATGCAAAGAATGTGGGAAAACC
TTCAGATATAACTCAAAACTGTCACGGCATCAGAAAATCCACACTGGAGAGAAACCATACTCATGTGAGG
AATGTGGACAAGCCTTCAGTCAAAATTCCCACCTTCTTCAGCATCAGAAGCTCCATGGTGGACAGAGGCC
CTATGAATGTACTGACTGTGGTAAAACCTTCAGTTATAATTCAAAACTGATTCGGCATCAGAGAATCCAT
ACTGGGGAGAAGCCCTTTAAATGTAAGGAATGTGGGAAAGCCTTCAGTTGTAGCTATGACTGCATCATCC
ATGAACGAATTCACAATGGGGAGAAGCCCTATGAATGTAAGGAGTGTGGGAAGAGTTTGAGTTCTAATTC
AGTTCTGATTCAGCATCAGAGAATCCACACTGGGGAGAAACCTTATGAATGTAAAGAGTGTGGCAAGGCC
TTCCACCGCAGTTCGGTATTTCTTCAGCACCAGAGGTTCCACACTGGGGAACAACTCTACAAATGTAATG
AATGTTGGAAAACTTTCAGCTGTAGCTCCCGCTTCATAGTGCATCAGAGAATCCACAATGGGGAGAAACC
CTATGAATGCCAGGAATGTGGGAAGACATTCAGTCAAAAGATCACTCTGGTTCAGCATCAGCGAGTTCAC
ACTGGGGAGAAACCTTATGAGTGTAAGGAGTGCGGGAAAGCCTTCAGATGGAATGCAAGTTTCATCCAGC
ATCAGAAGTGGCATACTAGGAAGAAACTCATCAATGGAACAGGGCTATCCGCAGTTAAGCCCTACTGTCC
CTGCGCCATCCTCTCTCCTCTGCCTCCCCAACATACCTGCTCTGCCCTAGCCCCACCAGGGCCTCCCTTA
TCTTCTTCACATGCAGTGGTACTTCCTCCCTCTGTGCCTTTCTTCCTGCTGCTTCCCTCATCTGAAAAGG
CCAACCCTTCACCTGTCCAAATAGCACATTTTTTTCAGGATCTCGCTTTTCCTGGGAAGTCATCCCTTCA
GAGCCCGAATCCTTTGTCTCACTCCCTGTAA

Translation (616 aa):
MLQTVWFQGLGRNLLFQEPVTFEDVAVYFTQNEWASLHPTQRALYREVMLENYANVTSLYPTAGGFPLDT
ERTEKVPGALSSFLPSSSSLELILALLPMSAFPFPKPDLIFQLEQGEAAWGPDPWTLAGGEALRGMCTGG
KTKTENEEKTAQLNISKESESHRLIVEGLLMDVPQHPDFKDRLEKSQLHDTGNKTKIGDCTDLTVQDHES
STTEREEIARKLEESSVSTHLITKQGFAKEQVFYKCGECGSYYNPHSDFHLHQRVHTNEKPYTCKECGKT
FRYNSKLSRHQKIHTGEKPYSCEECGQAFSQNSHLLQHQKLHGGQRPYECTDCGKTFSYNSKLIRHQRIH
TGEKPFKCKECGKAFSCSYDCIIHERIHNGEKPYECKECGKSLSSNSVLIQHQRIHTGEKPYECKECGKA
FHRSSVFLQHQRFHTGEQLYKCNECWKTFSCSSRFIVHQRIHNGEKPYECQECGKTFSQKITLVQHQRVH
TGEKPYECKECGKAFRWNASFIQHQKWHTRKKLINGTGLSAVKPYCPCAILSPLPPQHTCSALAPPGPPL
SSSHAVVLPPSVPFFLLLPSSEKANPSPVQIAHFFQDLAFPGKSSLQSPNPLSHSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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