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Report for CCDS27706.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27706.1 Public Mus musculus 15 Ttll12 23 108 98 CCDS HistoryNCBI Gene:223723Re-query CCDS DB by CCDS ID:27706.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27706.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016901.4 ENSMUSP00000016901.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016901.4Link to Ensembl Protein Viewer:ENSMUSP00000016901.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000016901Re-query CCDS DB by Protein ID:ENSMUSP00000016901
Original member Current member NCBI NM_183017.2 NP_898838.2 Accepted alive Link to Nucleotide Sequence:NM_183017.2Link to Protein Sequence:NP_898838.2Re-query CCDS DB by Nucleotide ID:NM_183017Re-query CCDS DB by Protein ID:NP_898838Link to BLAST:NP_898838.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898838.2 639 Q3UDE2 639 100% 0 0

Chromosomal Locations for CCDS 27706.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 83576897 83577048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83577747 83577885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83578635 83578703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83580068 83580149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83580495 83580646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83581668 83581779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83582045 83582239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83582346 83582462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83584656 83584732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83586851 83586984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83587074 83587233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83588503 83588701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83591379 83591548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83594949 83595110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1920 nt):
ATGGAGATCCAGTCCGGGCCGCAGCCTGGCAGTCCCGGCCGCGCCGAGAGGCTGAACGCGCGGCTGCTGG
ACGAGTTCGTGTCGCTGCACGGCCCTACGCTGCGCGCCTCGGGAGTCCCAGAGCGACTATGGGGCCGCCT
TCTGCACAAGCTGGAGCACGAGGTTTTCGATGCCGGGGAGATGTTTGGGATAATGCAGGTGGAGGAGGTG
GAGGAGGCTGAGGACGAGGCCGCCAGGGAGGCTCAGAGGAAGCAGCCCAACCCTGGGGGCGAGCTGTGCT
ACAAGGTCATTGTGACCAGTGAGAGCGGCGTCCGGGCTGACGACCCCAACAGCATCTTCCTCATCGACCA
TGCCTGGACGTGCCGTGTGGAGCATGCACGCAAACAGCTGCAGCAGGTACCTGGACTCCTGCACCGGATG
GCCAACCTCATGGGCATCGAGTTCCATGGGGAAGTGCCCAGCCCAGAGGTTGTGGCCCTAGTGCTGGAGG
AGATGTGGAAATTCAACCAGACCTATCAGCTGGCCCATGGGACAGCCGAAGAGAAGGTGCCAGTGTGGTA
CATCATGGACGAGTTTGGCTCGAGGATCCAGCACTCAGACATGCCCAGCTTCGCCACTGCTCCCTTCTTC
TACATGCCCCAGCAGGTGGCATACACGCTGCTGTGGCCCCTAAGGGACCTAGACACAGGCGAGGAGGTGA
CCCGGGACTTTGCCTACGGAGAGGCAGACCCTCTGATCCGGAAATGCATGCTGCTGCCCTGGGCCCCCGC
CGACATGCTGGACCTCAGCTTCTCTACGCCTGAGCCTCCTGCCAAGTACTACCAGGCCATTTTGGAGGAG
AACAAGGAGAAACTGCCGCTCGCCATTAGCCCAGTGGCACGTCCCCAGGGCCACGTCTTCAGAGTCCACT
GCGACGTGCAGCAGGTGCTCGGCCACCTTACCCACCCTCGCTTCACCTTCACTGATAGCGAGGCTGATGC
CGACATCTTCTTCCACTTCTCACACTTCAAGGACTACATGAAACTCAGCCAAGAGAGCCCACAGGTGCTA
CTCAACCAGTTCCCCTGTGAGAATCTGCTGACTGTTAAGGACTGTCTGGCCTCCATCGCTCGCCGGGCTG
GGGGTCCTGAGGGTCCCCCCTGGCTACCCCGAACCTTCAACCTGCGCACTGAGCTGCCCCAGTTTGTCAG
CTATTTCCAGCACCGGGAGAGGCGGGGTGAAGACAACCACTGGATCTGCAAGCCCTGGAACCTGGCCCGC
AGCCTGGACACTCACGTCACCAACAACCTCCACAGTATCATTCGGCACCGAGAGAGCACCCCCAAGGTTG
TGTCCAAGTACATCGAAAGTCCCGTCTTGTTCCTCCGAGAAGATGTGGGGAACGTCAAGTTTGACATCCG
CTACATTGTGCTGCTGCGCTCAGTGAGGCCGCTGAGGTTGTTTGCTTACGATGTGTTTTGGCTACGCTTC
TCCAATCGGCCCTTCGCCCTCGATGACCTAGACGACTATGAGAAGCATTTCACCGTCATGAACTATGACC
CGGATGTGGTGCTGAAGCAGGTGCACTATAATGAGTTCATCCCTCAGTTTGAGAAGCAGTACCCAGAGTT
TCCCTGGAGTGATGTTCAGGCTGAGATCTTCAAGGCCTTCACGGAGCTGTTCCAAGTGGCATGTGCCAAG
CCACCGCCCATGGGCCTCTGTGACTACCCCTCATCCCGGGCCATGTATGCCATTGATCTCATGCTCAACT
GGGACAACCACCCAGATGGAAAGCGGGTGATGCAGCCCCAAATCCTGGAGGTGAACTTCAACCCCGACTG
CGAGCGAGCCTGCAGATACCACCCCTCATTCTTCAATGATGTCTTCAGCACTTTGTTTCTGGACGAGACT
GACAACTGCCATGTCACCCGCATCATCTAG

Translation (639 aa):
MEIQSGPQPGSPGRAERLNARLLDEFVSLHGPTLRASGVPERLWGRLLHKLEHEVFDAGEMFGIMQVEEV
EEAEDEAAREAQRKQPNPGGELCYKVIVTSESGVRADDPNSIFLIDHAWTCRVEHARKQLQQVPGLLHRM
ANLMGIEFHGEVPSPEVVALVLEEMWKFNQTYQLAHGTAEEKVPVWYIMDEFGSRIQHSDMPSFATAPFF
YMPQQVAYTLLWPLRDLDTGEEVTRDFAYGEADPLIRKCMLLPWAPADMLDLSFSTPEPPAKYYQAILEE
NKEKLPLAISPVARPQGHVFRVHCDVQQVLGHLTHPRFTFTDSEADADIFFHFSHFKDYMKLSQESPQVL
LNQFPCENLLTVKDCLASIARRAGGPEGPPWLPRTFNLRTELPQFVSYFQHRERRGEDNHWICKPWNLAR
SLDTHVTNNLHSIIRHRESTPKVVSKYIESPVLFLREDVGNVKFDIRYIVLLRSVRPLRLFAYDVFWLRF
SNRPFALDDLDDYEKHFTVMNYDPDVVLKQVHYNEFIPQFEKQYPEFPWSDVQAEIFKAFTELFQVACAK
PPPMGLCDYPSSRAMYAIDLMLNWDNHPDGKRVMQPQILEVNFNPDCERACRYHPSFFNDVFSTLFLDET
DNCHVTRII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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