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Report for CCDS24424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24424.1 Public Mus musculus 11 Wap 23 108 98 CCDS HistoryNCBI Gene:22373Re-query CCDS DB by CCDS ID:24424.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24424.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102910.3 ENSMUSP00000099974.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102910.3Link to Ensembl Protein Viewer:ENSMUSP00000099974.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102910Re-query CCDS DB by Protein ID:ENSMUSP00000099974
Original member Current member NCBI NM_011709.5 NP_035839.3 Accepted alive Link to Nucleotide Sequence:NM_011709.5Link to Protein Sequence:NP_035839.3Re-query CCDS DB by Nucleotide ID:NM_011709Re-query CCDS DB by Protein ID:NP_035839Link to BLAST:NP_035839.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035839.3 134 P01173 134 98.5075% 0 2

Chromosomal Locations for CCDS 24424.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 6635613 6635629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6636710 6636874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6637190 6637324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6638535 6638622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGCGTTGCCTCATCAGCCTTGTTCTTGGCCTGCTGGCCCTGGAGGTGGCCCTCGCTCAGAACCTAGAGG
AACAAGTCTTCAACTCAGTTCAGTCCATGTTCCCAAAAGCCAGCCCCATTGAGGGCACAGAGTGTATCAT
CTGCCAAACCAACGAGGAGTGTGCCCAGAATGCCATGTGCTGTCCCGGTTCCTGTGGTAGGACCCGCAAA
ACTCCTGTCAACATTGGTGTTCCGAAAGCTGGCTTCTGCCCTTGGAATCTACTCCAAATGATCAGTAGTA
CCGGGCCGTGCCCAATGAAGATAGAATGCTCCAGCGACCGTGAGTGTTCTGGCAACATGAAATGCTGCAA
CGTCGACTGTGTCATGACATGTACACCCCCAGTGCCAGTGATAACCCTTCAGTGA

Translation (134 aa):
MRCLISLVLGLLALEVALAQNLEEQVFNSVQSMFPKASPIEGTECIICQTNEECAQNAMCCPGSCGRTRK
TPVNIGVPKAGFCPWNLLQMISSTGPCPMKIECSSDRECSGNMKCCNVDCVMTCTPPVPVITLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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