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Report for CCDS27730.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
27730.2 |
Public |
Mus musculus |
15 |
Brd1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:223770](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:27730.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 15 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 27730.1 |
The coding region has been updated to extend the C-terminus to one that is more supported by available transcript and homology data. |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 27730.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000109381.8 |
ENSMUSP00000105007.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000109381.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000105007.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000109381](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000105007](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001033274.3 |
NP_001028446.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001033274.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001028446.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001033274](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001028446](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001028446.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001028446.2 |
1189 |
G5E8P1-2 |
1189 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 27730.2
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3570 nt): ATGAGGAGGAAAGGACGATGCCATCGAGGTTCTGCAGCGAGGCATCCTTCTTCCCCGTGCAGTATTAAAC ACTCCCCCACTCGAGAAACACTGACCTACGCACAAGCTCAAAGGATGGTGGAGATAGAAATCGAAGGGCG CTTGCATCGGATCAGTATTTTTGATCCCTTGGAGATCATACTAGAAGATGACCTCACTGCTCAGGAAATG AGTGAATGTAACAGTAATAAGGAGAACAGCGAGAGGCCGCCTGTTTGCTTAAGAACTAAGCGTCACAAAA ACAACAGAGTCAAAAAGAAAAATGAAGTCCTGCCCAGCACCCACGGCACACCGGCGTCAGCCAGTGCCCT TCCCGAGCCCAAGGTGCGGATTGTGGAGTACAGTCCTCCCTCTGCACCCAGGAGGCCCCCTGTGTACTAC AAGTTCATCGAGAAGTCAGCCGAGGAGCTGGACAACGAGGTAGAGTACGACATGGATGAGGAAGACTACG CCTGGCTAGAGATCATCAATGAGAAGCGGAAGGGTGACTGCGTCTCTGCCGTGTCACAGAATATGTTTGA GTTCCTGATGGACCGCTTCGAGAAGGAGTCTTACTGTGAGAACCAGAAGCAGGGTGAGCAGCAGTCCTTG ATAGATGAGGACGCTGTTTGCTGCATCTGCATGGACGGGGAGTGCCAGAACAGCAACGTTATACTCTTCT GTGACATGTGCAACCTGGCTGTGCACCAGGAGTGCTATGGGGTACCCTACATCCCCGAGGGCCAGTGGCT TTGCCGCCACTGCCTGCAGTCTCGGGCCCGCCCTGCGGATTGCGTGCTGTGCCCGAATAAGGGCGGTGCC TTCAAAAAGACAGACGATGACCGCTGGGGCCACGTGGTATGTGCCCTGTGGATCCCAGAGGTTGGCTTTG CCAACACGGTATTCATTGAGCCCATTGACGGTGTGAGGAACATCCCTCCTGCCCGGTGGAAACTGACATG CTACCTCTGTAAGCAGAAAGGCGTGGGTGCCTGCATTCAGTGCCACAAAGCAAATTGCTACACAGCATTC CATGTGACATGTGCCCAGAAGGCTGGCCTATACATGAAGATGGAGCCTGTGAAGGAGCTGACTGGAGGCA GCGCCACGTTCTCTGTCAGAAAGACTGCTTACTGTGATGTCCACACGCCTCCAGGCTGTACCCGGAGGCC GTTGAACATTTATGGAGATGTTGAAATGAAAAATGGTGTGTGTCGAAAAGAAAGCTCAGTCAAAACGGTC AGGTCTACGTCCAAGGTCAGGAAAAAAGCAAAAAAGGCTAAGAAAACACTGGCTGAGCCCTGTGCGGTCC TGCCGACCGTGTGCGCTCCGTATATCCCCCCTCAGAGATTAAATAGGATTGCGAATCAGGTGGCCATTCA GCGGAAGAAGCAGTTTGTGGAGCGAGCCCACAGCTACTGGTTGCTCAAAAGGCTGTCTAGGAATGGTGCT CCCCTGTTGCGGCGGCTCCAGTCCAGCCTGCAGTCCCAGAGAAACACGCAGCAGAGAGAAAATGATGAAG AGATGAAAGCTGCCAAAGAGAAGCTAAAGTACTGGCAGCGGCTGCGACATGACCTAGAGCGTGCACGCCT GCTAATTGAGCTGCTGCGCAAGCGGGAGAAACTCAAGAGAGAGCAGGTGAAGGTGGAGCAGATGGCTATG GAGCTCCGGCTGACGCCGCTAACTGTGCTGCTACGCTCAGTCCTGGAGCAGCTACAGGAGAAGGACCCTG CAAAGATCTTTGCCCAGCCCGTGAGTCTCAAGGAGGTACCAGATTATTTGGATCACATTAAACACCCCAT GGACTTTGCTACAATGAGGAAACGGCTAGAAGCTCAAGGGTATAAAAACCTCCATGCCTTTGAGGAGGAT TTTAATCTCATTGTAGATAACTGCATGAAGTACAATGCCAAGGACACCGTGTTTTATAGAGCTGCAGTGA GGCTGCGCGACCAGGGAGGGGTTGTCCTGAGGCAGGCCCGGCGAGAGGTGGAGAGCATTGGCCTGGAAGA GGCCTCGGGAATGCACCTGCCTGAGCGACCCATCGCAGCCCCTCGGCGGCCCTTCTCCTGGGAAGAGGTG GACAGGTTGCTGGACCCAGCCAACAGGGCCCACATGAGCTTGGAGGAGCAGCTGAGAGAACTTCTGGACA AGTTGGACCTGACCTGCTCCATGAAGTCCAGCGGCTCACGGAGTAAACGGGCAAAGCTGCTTAAAAAAGA GATTGCTCTTCTCCGAAACAAGCTGAGCCAGCAGCACAGCCAGGCTCCGCCCACAGGGGCAGGCACGGGA GGCTTTGAAGATGAGGCTGCTCCACTGGCCCCGGACACAGCGGAGGAAGGAGCTAACTCTCCCCCTAAAC TTGAACCATCAGATGCATTACCTCTTCCTTCAAACTCGGAGACTAACTCAGAACCACCAACCCTCAACCC AGTAGAACTCCACCCCGAGCAGAGTAAACTATTCAAAAGAGTCACATTTGATAATGAATCACATAGCACT TGCACTCAGAGCGCACTGGTAAGCGGACACCCTCCAGAGCCCACCCTCGCCAGTAGTGGCGATGTGCCGG CGGCGGCGGCCTCCGCAGTGGCGGAGCCATCAAGCGATGTAAACAGACGCACTTCTGTTCTCTTCTGCAA ATCGAAAAGTGTAAGCCCCCCAAAGTCTGCCAAGAACACTGAAACCCAGCCAACTTCTCCTCAGCTAGGG ACCAAAACCTTTTTGTCTGTAGTCCTTCCGAGGTTGGAGACTCTACTGCAGCCAAGGAAAAGGTCGAGGA GCACATGTGGAGACTCCGAAGTGGAGGAGGAGTCCCCGGGAAAGCGCCTGGACACAGGTCTCACCAATGG CTTTGGGGGTGCTAGAAGCGAACAGGAGCCAGGAGGGGGCCCAGGGAGGAAAGCTGCGCCCCGGCGGCGC TGTGCATCTGAATCCAGTATTTGTTCCAGCAACAGCCCACTCTGCGACTCAAGCTTTAGCACACCCAAGT GTGGGCGAGGGAAACCTGCCCTTGTGCGAAGGCACACGCTAGAAGACCGAAGCGAGCTGATATCTTGTAT TGAAAATGGAAACTACGCTAAGGCGGCCAGGATTGCAGCTGAGGTGGGCCAGAGCAACATGTGGATTTCC ACTGACGCTGCTGCCTCCGTCCTGGAGCCCCTGAAGGTGGTATGGGCCAAGTGCAGCGGCTACCCCTCCT ACCCAGCACTGATTATTGACCCCAAGATGCCACGAGTGCCTGGCCACCACAATGGCGTCACCATCCCTGC GCCGCCGCTGGATGTGCTGAAGATCGGTGAACACATGCAGACCAAGTCCGAGGAGAAGCTCTTCCTTGTT CTGTTTTTCGACAATAAGAGGAGCTGGCAGTGGCTTCCCAAGTCCAAGATGGTCCCTCTTGGTGTCGACG AGACCATCGACAAGTTGAAAATGATGGAAGGGAGGAACTCTAGCATCCGGAAGGCTGTGCGGATTGCATT TGATCGAGCCATGAATCATCTGAGCCGGGTCCATGGGGAGCCAGCCAGTGACCTCAGTGACATTGACTGA
Translation (1189 aa): MRRKGRCHRGSAARHPSSPCSIKHSPTRETLTYAQAQRMVEIEIEGRLHRISIFDPLEIILEDDLTAQEM SECNSNKENSERPPVCLRTKRHKNNRVKKKNEVLPSTHGTPASASALPEPKVRIVEYSPPSAPRRPPVYY KFIEKSAEELDNEVEYDMDEEDYAWLEIINEKRKGDCVSAVSQNMFEFLMDRFEKESYCENQKQGEQQSL IDEDAVCCICMDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPADCVLCPNKGGA FKKTDDDRWGHVVCALWIPEVGFANTVFIEPIDGVRNIPPARWKLTCYLCKQKGVGACIQCHKANCYTAF HVTCAQKAGLYMKMEPVKELTGGSATFSVRKTAYCDVHTPPGCTRRPLNIYGDVEMKNGVCRKESSVKTV RSTSKVRKKAKKAKKTLAEPCAVLPTVCAPYIPPQRLNRIANQVAIQRKKQFVERAHSYWLLKRLSRNGA PLLRRLQSSLQSQRNTQQRENDEEMKAAKEKLKYWQRLRHDLERARLLIELLRKREKLKREQVKVEQMAM ELRLTPLTVLLRSVLEQLQEKDPAKIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHAFEED FNLIVDNCMKYNAKDTVFYRAAVRLRDQGGVVLRQARREVESIGLEEASGMHLPERPIAAPRRPFSWEEV DRLLDPANRAHMSLEEQLRELLDKLDLTCSMKSSGSRSKRAKLLKKEIALLRNKLSQQHSQAPPTGAGTG GFEDEAAPLAPDTAEEGANSPPKLEPSDALPLPSNSETNSEPPTLNPVELHPEQSKLFKRVTFDNESHST CTQSALVSGHPPEPTLASSGDVPAAAASAVAEPSSDVNRRTSVLFCKSKSVSPPKSAKNTETQPTSPQLG TKTFLSVVLPRLETLLQPRKRSRSTCGDSEVEEESPGKRLDTGLTNGFGGARSEQEPGGGPGRKAAPRRR CASESSICSSNSPLCDSSFSTPKCGRGKPALVRRHTLEDRSELISCIENGNYAKAARIAAEVGQSNMWIS TDAAASVLEPLKVVWAKCSGYPSYPALIIDPKMPRVPGHHNGVTIPAPPLDVLKIGEHMQTKSEEKLFLV LFFDNKRSWQWLPKSKMVPLGVDETIDKLKMMEGRNSSIRKAVRIAFDRAMNHLSRVHGEPASDLSDID
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