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Report for CCDS51485.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51485.1 Public Mus musculus 5 Wdr1 23 108 98 CCDS HistoryNCBI Gene:22388Re-query CCDS DB by CCDS ID:51485.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51485.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005234.12 ENSMUSP00000005234.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005234.12Link to Ensembl Protein Viewer:ENSMUSP00000005234.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000005234Re-query CCDS DB by Protein ID:ENSMUSP00000005234
Original member Current member NCBI NM_011715.3 NP_035845.1 Accepted alive Link to Nucleotide Sequence:NM_011715.3Link to Protein Sequence:NP_035845.1Re-query CCDS DB by Nucleotide ID:NM_011715Re-query CCDS DB by Protein ID:NP_035845Link to BLAST:NP_035845.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035845.1 606 O88342 606 100% 0 0

Chromosomal Locations for CCDS 51485.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 38527806 38527912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38529525 38529669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38529937 38530110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38531015 38531125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38533484 38533571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38535184 38535340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38537139 38537226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38540013 38540246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38540504 38540584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38540801 38540878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38545674 38545854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38546944 38547091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38551377 38551467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38561080 38561201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38561516 38561531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGCCGTACGAGATCAAGAAGGTGTTCGCCAGCCTCCCCCAGGTGGAGCGGGGCGTCTCTAAGATCCTCG
GTGGAGACCCCAAGGGCGATCATTTCCTCTACACCAATGGCAAGTGCGTCATCCTAAGAAACATCGATAA
CCCTGCTATTGCTGATATCTACACAGAACATGCCCATCAAGTGGTAGTAGCCAAGTATGCACCCAGCGGA
TTCTACATTGCTTCTGGAGACATCTCTGGGAAGCTAAGGATCTGGGATACCACACAGAAGGAGCATCTTC
TAAAGTATGAGTACCAGCCTTTCGCTGGGAAGATCAAGGACATTGCCTGGACGGAAGACAGTAAGAGGAT
CGCCGTGGTCGGGGAAGGAAGGGAGAAGTTTGGAGCTGTCTTCTTATGGGACACTGGCTCTTCTGTGGGT
GAGATCACAGGACACAACAAAGTCATCAACAGTGTGGACATAAAGCAGACCAGGCCCTACCGACTAGCAA
CAGGGAGTGATGATAACTGTGCTGCGTTCTTCGAGGGCCCTCCATTCAAGTTCAAGTTCACAATTGGTGA
CCACAGCCGCTTTGTCAACTGTGTGCGATTCTCTCCTGATGGGAACAGATTTGCCACAGCTAGCGCTGAT
GGCCAGATTTTCATTTATGATGGGAAGACGGGAGAGAAGGTGTGTGCCCTTGGAGAAAGCAAGGCCCATG
ATGGAGGAATTTATGCCATTAGTTGGAGTCCTGATAGCACTCATTTGCTATCTGCCTCTGGAGACAAAAC
CTCTAAGATTTGGGATGTCAATGTAAACTCTGTGGTCAGCACGTTTCCCATGGGCTCCAATGTTCTGGAC
CAGCAGCTGGGCTGCCTCTGGCAGAAGGACCACCTCCTCAGCATCTCCCTGTCTGGATACATCAACTACC
TGGACAAGAACAACCCCAGCAAACCCCTCCGGGTCATCAAGGGTCACAGTAAATCCATCCAGTGTCTGAC
CGTGCACAGAAATGGTGGCAAGTCCTACATCTATTCTGGGAGCCATGATGGACATATCAATTACTGGGAT
TCAGAGACAGGAGAGAATGACTCCTTCTCTGGAAAAGGCCACACAAATCAGGTGTCCAGGATGACTGTGA
ATGAGTCTGAGCAGTTGGTCAGCTGCAGCATGGATGACACAGTGCGGTACACCAACCTCACACTGAGGGA
CTACAGTGGACAAGGCGTTGTGAAACTGGATGTTCAACCAAAGTGTGTAGCTGTTGGCCCTGGGGGATAT
ACTGTGGTCGTGTGCATTGGACAGATTGTCCTTCTGAAGGACCAGAAGAAGTGCTTCAGCATCGACAACC
CTGGCTACGAGCCTGAAGTCGTCGCTGTGCACCCTGGTGGGGACACAGTGGCTGTTGGTGGCACGGATGG
CAATGTGCGTGTGTACTCCATCCTGGCCTCCACACTAAAGGATGAAGGCAAACTCCTAGAGGCCAAGGGA
CCAGTAACAGACGTGGCCTACTCTCATGATGGTGCCTTCCTGGCTGTGTGTGATGCCAGCAAGGTGGTCA
CAGTATTCAGTGTAGCTGATGGCTATTCGGAGAATAATGTTTTTTATGGACACCATGCAAAAATTGTGTG
CCTGGCCTGGTCACCAGATAATGAACACTTTGCCTCTGGCGGCATGGATATGATGGTGTACGTCTGGACG
CTGAGTGACCCAGAGACCAAAGTCAAGATCCAAGATGCTCACCGGCTGCACCACGTCAGCAGCCTGGCCT
GGCTAGACGAACACACACTGGTCACCACCTCCCATGACGCCTCTGTGAAGGAGTGGACAATCACCTACTG
A

Translation (606 aa):
MPYEIKKVFASLPQVERGVSKILGGDPKGDHFLYTNGKCVILRNIDNPAIADIYTEHAHQVVVAKYAPSG
FYIASGDISGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLWDTGSSVG
EITGHNKVINSVDIKQTRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASAD
GQIFIYDGKTGEKVCALGESKAHDGGIYAISWSPDSTHLLSASGDKTSKIWDVNVNSVVSTFPMGSNVLD
QQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHRNGGKSYIYSGSHDGHINYWD
SETGENDSFSGKGHTNQVSRMTVNESEQLVSCSMDDTVRYTNLTLRDYSGQGVVKLDVQPKCVAVGPGGY
TVVVCIGQIVLLKDQKKCFSIDNPGYEPEVVAVHPGGDTVAVGGTDGNVRVYSILASTLKDEGKLLEAKG
PVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWT
LSDPETKVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVKEWTITY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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