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Report for CCDS14359.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14359.1 Public Homo sapiens X FGD1 24 110 108 CCDS HistoryNCBI Gene:2245Re-query CCDS DB by CCDS ID:14359.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14359.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375135.4 ENSP00000364277.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375135.4Link to Ensembl Protein Viewer:ENSP00000364277.3Re-query CCDS DB by Nucleotide ID:ENST00000375135Re-query CCDS DB by Protein ID:ENSP00000364277
Original member Current member NCBI NM_004463.3 NP_004454.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004463.3Link to Protein Sequence:NP_004454.2Re-query CCDS DB by Nucleotide ID:NM_004463Re-query CCDS DB by Protein ID:NP_004454Link to BLAST:NP_004454.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004454.2 961 P98174 961 100% 0 0

Chromosomal Locations for CCDS 14359.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 54446109 54446414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54447311 54447454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54448806 54448967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54449143 54449268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54449659 54449760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54450271 54450301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54455448 54455527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54455692 54455784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54456220 54456366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54456509 54456567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54465451 54465589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54465696 54465852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54467784 54467932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54468787 54468876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54470016 54470457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54470583 54470760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54471314 54471487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54495126 54495432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2886 nt):
ATGCATGGCCACCGAGCCCCGGGGGGCGCCGGGCCTTCGGAGCCCGAACACCCGGCCACGAACCCGCCGG
GCGCCGCTCCGCCGGCCTGTGCCGACTCGGACCCTGGAGCCTCGGAACCCGGACTGCTGGCGCGCAGGGG
CTCAGGTTCGGCTCTTGGCGGCCCACTGGATCCCCAGTTTGTCGGACCCTCGGACACCAGCCTGGGCGCT
GCTCCAGGCCACCGGGTCTTGCCCTGCGGTCCCAGTCCACAGCACCACCGGGCCCTGCGCTTCTCTTACC
ACCTGGAGGGCTCGCAGCCTCGGCCTGGGCTGCACCAGGGAAACCGGATCCTGGTTAAAAGTTTGTCCCT
TGACCCTGGCCAAAGCCTAGAGCCTCATCCAGAAGGTCCCCAGCGGCTTCGCTCAGACCCAGGTCCCCCG
ACTGAAACCCCTAGCCAGCGTCCTTCACCACTGAAGCGGGCACCGGGCCCGAAGCCACAGGTGCCCCCAA
AGCCCAGCTACCTGCAGATGCCCCGGATGCCCCCCCCACTGGAGCCCATCCCCCCTCCACCATCACGCCC
ACTGCCTGCCGACCCCCGAGTGGCCAAGGGCCTGGCTCCCAGGGCAGAGGCCAGCCCCAGTTCTGCAGCA
GTATCCTCACTGATTGAGAAGTTTGAAAGAGAGCCTGTGATTGTCGCCTCGGATAGACCAGTCCCTGGCC
CCAGCCCAGGTCCCCCAGAGCCAGTCATGTTGCCACAGCCAACCTCGCAGCCACCAGTGCCCCAGCTCCC
CGAGGGTGAGGCCTCCCGCTGCCTGTTTCTGCTGGCTCCTGGGCCCCGGGACGGTGAGAAGGTGCCCAAC
CGGGACAGCGGCATTGATAGCATCAGCTCGCCATCCAACAGCGAGGAGACCTGCTTCGTCAGTGATGACG
GGCCCCCCAGCCACAGCCTCTGCCCTGGGCCCCCTGCCCTGGCTAGTGTGCCTGTTGCCTTGGCCGACCC
CCACCGGCCTGGCTCCCAAGAGGTTGACAGTGACCTGGAGGAGGAGGACGACGAGGAGGAGGAGGAAGAG
AAGGACAGAGAAATCCCAGTGCCCCTGATGGAGAGACAGGAGTCTGTGGAGTTGACTGTGCAGCAAAAGG
TGTTTCACATTGCCAATGAGCTCCTGCAAACTGAGAAGGCCTACGTTTCCAGGCTCCATCTCCTGGATCA
GGTGTTCTGTGCCCGGCTGCTGGAAGAAGCTCGGAACCGCAGTTCCTTCCCGGCCGACGTTGTCCACGGC
ATCTTCTCTAACATCTGCTCCATCTATTGCTTCCACCAGCAGTTCCTGCTGCCTGAGCTAGAGAAGCGCA
TGGAGGAATGGGACCGCTATCCACGCATTGGAGACATCCTGCAGAAACTGGCCCCCTTCCTCAAGATGTA
TGGTGAGTATGTGAAGAACTTTGACCGGGCCGTGGAGCTGGTCAACACCTGGACAGAGCGCTCCACCCAG
TTTAAAGTCATCATCCATGAGGTGCAGAAGGAGGAAGCCTGTGGCAACCTGACATTGCAGCACCACATGC
TGGAGCCTGTGCAGCGCATCCCCCGCTATGAGCTTCTTCTCAAGGACTATCTGTTAAAGCTGCCCCATGG
CTCCCCGGACAGCAAGGATGCCCAAAAGTCTCTGGAGCTGATCGCCACAGCAGCAGAGCACTCGAATGCT
GCCATCCGCAAAATGGAGCGAATGCATAAGCTGCTGAAGGTATATGAGCTGTTAGGGGGCGAGGAGGACA
TTGTCAGCCCCACCAAAGAGCTCATAAAAGAAGGCCACATCCTTAAGCTGTCAGCAAAGAATGGGACCAC
TCAAGACCGATACCTCATACTATTCAACGACCGCCTCCTTTACTGCGTGCCCAGGCTGCGGCTCCTTGGC
CAGAAGTTTAGCGTGCGGGCACGCATTGATGTAGATGGCATGGAGCTAAAGGAGAGCTCCAACCTCAATC
TGCCTCGAACCTTCCTGGTGTCAGGAAAGCAGCGCTCCCTCGAGCTCCAGGCCAGGACTGAGGAGGAGAA
GAAAGACTGGGTCCAGGCCATCAACTCCACCCTCCTGAAGCATGAACAGACGCTGGAGACTTTCAAACTG
TTGAACTCAACAAACAGGGAAGATGAAGACACCCCACCCAACTCTCCAAACGTGGATCTTGGGAAGCGGG
CACCTACGCCCATCCGGGAAAAGGAAGTCACCATGTGCATGCGCTGCCAGGAGCCCTTCAATTCTATCAC
CAAACGCAGGCACCACTGCAAGGCCTGCGGGCATGTGGTTTGTGGGAAGTGCTCCGAGTTCCGGGCCCGC
CTCGTCTATGACAACAACCGCTCCAACCGTGTGTGCACTGATTGCTATGTGGCCTTGCACGGGGTGCCTG
GGAGCAGTCCAGCCTGCAGCCAGCATACACCCCAGCGCCGGAGGTCCATCCTGGAGAAACAGGCCTCAGT
GGCTGCAGAGAACAGCGTCATCTGCAGCTTCCTGCACTACATGGAGAAGGGTGGCAAAGGATGGCACAAG
GCATGGTTCGTGGTCCCTGAAAATGAACCCTTGGTGCTGTATATCTACGGAGCCCCTCAGGATGTGAAAG
CCCAGCGCAGCCTGCCCCTCATTGGCTTCGAGGTGGGACCGCCCGAGGCAGGGGAGCGGCCTGACAGAAG
GCATGTCTTCAAGATCACCCAGAGCCACCTCAGCTGGTACTTCAGCCCTGAGACAGAGGAACTACAGCGA
CGCTGGATGGCTGTGCTTGGCCGGGCGGGCCGAGGGGACACGTTCTGCCCGGGGCCCACACTGTCTGAGG
ACAGGGAGATGGAGGAGGCACCGGTGGCTGCTTTAGGAGCCACTGCTGAACCCCCCGAATCCCCCCAGAC
CCGAGACAAGACCTAG

Translation (961 aa):
MHGHRAPGGAGPSEPEHPATNPPGAAPPACADSDPGASEPGLLARRGSGSALGGPLDPQFVGPSDTSLGA
APGHRVLPCGPSPQHHRALRFSYHLEGSQPRPGLHQGNRILVKSLSLDPGQSLEPHPEGPQRLRSDPGPP
TETPSQRPSPLKRAPGPKPQVPPKPSYLQMPRMPPPLEPIPPPPSRPLPADPRVAKGLAPRAEASPSSAA
VSSLIEKFEREPVIVASDRPVPGPSPGPPEPVMLPQPTSQPPVPQLPEGEASRCLFLLAPGPRDGEKVPN
RDSGIDSISSPSNSEETCFVSDDGPPSHSLCPGPPALASVPVALADPHRPGSQEVDSDLEEEDDEEEEEE
KDREIPVPLMERQESVELTVQQKVFHIANELLQTEKAYVSRLHLLDQVFCARLLEEARNRSSFPADVVHG
IFSNICSIYCFHQQFLLPELEKRMEEWDRYPRIGDILQKLAPFLKMYGEYVKNFDRAVELVNTWTERSTQ
FKVIIHEVQKEEACGNLTLQHHMLEPVQRIPRYELLLKDYLLKLPHGSPDSKDAQKSLELIATAAEHSNA
AIRKMERMHKLLKVYELLGGEEDIVSPTKELIKEGHILKLSAKNGTTQDRYLILFNDRLLYCVPRLRLLG
QKFSVRARIDVDGMELKESSNLNLPRTFLVSGKQRSLELQARTEEEKKDWVQAINSTLLKHEQTLETFKL
LNSTNREDEDTPPNSPNVDLGKRAPTPIREKEVTMCMRCQEPFNSITKRRHHCKACGHVVCGKCSEFRAR
LVYDNNRSNRVCTDCYVALHGVPGSSPACSQHTPQRRRSILEKQASVAAENSVICSFLHYMEKGGKGWHK
AWFVVPENEPLVLYIYGAPQDVKAQRSLPLIGFEVGPPEAGERPDRRHVFKITQSHLSWYFSPETEELQR
RWMAVLGRAGRGDTFCPGPTLSEDREMEEAPVAALGATAEPPESPQTRDKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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