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Report for CCDS50267.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50267.1 Public Mus musculus 18 Rbm27 23 108 98 CCDS HistoryNCBI Gene:225432Re-query CCDS DB by CCDS ID:50267.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50267.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091920.5 ENSMUSP00000089540.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091920.5Link to Ensembl Protein Viewer:ENSMUSP00000089540.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000091920Re-query CCDS DB by Protein ID:ENSMUSP00000089540
Original member NCBI NM_172626.2 NP_766214.2 Updated not alive Link to Nucleotide Sequence:NM_172626.2Link to Protein Sequence:NP_766214.2Re-query CCDS DB by Nucleotide ID:NM_172626Re-query CCDS DB by Protein ID:NP_766214
Current member NCBI NM_172626.3 NP_766214.2 Accepted alive Link to Nucleotide Sequence:NM_172626.3Link to Protein Sequence:NP_766214.2Re-query CCDS DB by Nucleotide ID:NM_172626Re-query CCDS DB by Protein ID:NP_766214Link to BLAST:NP_766214.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766214.2 1005 Q5SFM8-2 1005 100% 0 0

Chromosomal Locations for CCDS 50267.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 42275534 42275592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42288108 42288226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42291983 42292107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42298433 42298524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42299143 42299336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42300250 42300510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42301723 42302016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42305680 42305814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42317601 42317750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42319802 42319946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42320764 42320917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42321912 42322208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42324055 42324198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42325905 42326024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42327164 42327238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42327354 42327518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42332780 42332884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42333209 42333397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42336963 42337073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42338392 42338475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3018 nt):
ATGCTCATAGAAGATGTGGATGCCCTCAAGTCCTGGCTGGCCAAGTTACTGGAGCCGATATGTGATGCTG
ACCCTTCAGCCCTAGCCAACTATGTTGTAGCACTGGTCAAGAAGGACAAACCTGAGAAGGAATTGAAAGC
CTTTTGTGCTGACCAACTTGATGTCTTTTTACAAAAAGAGACTTCAGGTTTTGTGGACAAACTATTTGAA
AGTCTTTATACTAAGAACTACCTTCCACCATTGGAACCAGTTAAACCTGAGCCAAAACCACTAGTCCAAG
AAAAAGAAGAAATTAAAGAAGAGGTATTTCAAGAGCCAGCAGAAGAAGAACGAGATACTAGAAAGAAGAA
ATATCCTAGTCCTCAGAAGAGTCGTTCAGAATCTAGTGAACGAAGAACACGTGAGAAGAAAAGAGAAGAT
GGCAAGTGGAGAGACTATGAGCGGTACTACGAGCGGAATGAGCTGTATCGGGAGAAGTATGACTGGAGAA
GGGGCAGGAGCAAGAGCAGGAGTAAGAGCCGAGGCTTGAGTCGGAGTAGAAGCCGGAGCAGGGGCCGCAG
CAAAGACCGGGATCCAAACAGGAACGTTGAGCACAGGGAAAGATCAAAGTTTAAGAGCGAAAGAAATGAC
CTGGAGAGCTCTTATGTGCCTGTGTCTGCTCCACCTCCAAGCTCTTCTGAGCAGTATTCCTCTGGGGCAC
AGTCTATTCCCAGCACTGTCACTGTGATTGCACCTGCGCACCATTCTGAGAACACAACTGAGAGCTGGTC
TAATTACTATAACAATCATAGCTCTTCCAATTCTTTTGGTCGAAACCCACCACCAAAGAGGCGCTGCAGA
GATTACGATGAAAGAGGATTTTGTGTACTTGGTGACCTTTGTCAGTTTGATCATGGAAATGATCCTCTAG
TTGTTGATGAAGTTGCTCTGCCAAGTATGATTCCTTTCCCACCCCCTCCTCCTGGGCTTCCTCCTCCACC
ACCTCCCGGAATGTTAATGCCTCCAATGCCAGGTCCAGGCCCAGGCCCTGGTCCTGGCCCTGGCCCTGGT
CCCGGCCCAGGCCCAGGCCCTGGTCATAGTATGAGACTTCCTGTTCCTCAAGGACATGGTCAGCCTCCAC
CTTCTGTTGTGCTTCCCATACCAAGACCTCCCATTTCACAGTCAAGTTTAATAAACAGCCGTGACCAGCC
TGGGACAAGTGCAGTGCCCAATCTTGCACCAGTGGGAGCAAGACTACCTCCTCCTTTACCGCAGAACCTC
CTTTATACAGTATCAGAAAATACATATGAACCAGATGGCTATAATCCTGAAGCACCTAGCATCACCAGTT
CTGGTAGATCACAGTACAGACAGTTCTTCTCAAGAGCACAGACACAGCGTCCCAACCTGATTGGCCTCAC
ATCTGGAGATATGGATGCAAATCCAAGAGCTGCTAATATTGTCATCCAGACTGAACCACCAGTTCCTGTT
TCAGTTAATAGCAACGTCACCAGAGTAGTCCTGGAACCAGAGAGCCGAAAGAGAGCTATTAGTGGTTTGG
AGGGGCCACTTACAAAGAAGCCTTGGCTGGGAAAACAAGGGAACAACAATCAAAGTAAACCAGGCTTCCT
GAGGAAGAATCATTATACAAACACCAAACTAGAGGTGAAAAAAATCCCCCAGGAATTGAACAACATTACC
AAGCTCAACGAACACTTCAGCAAATTTGGAACCATAGTTAATATCCAGGTTGCTTTTAAGGGTGATCCAG
AAGCAGCACTCATCCAATACCTTACCAATGAAGAGGCCAGGAAAGCCATTTCTAGCACAGAAGCAGTTTT
GAACAATCGGTTCATTCGAGTCCTGTGGCATAGAGAGAACAATGAGCAACCAGCACTCCAGTCCTCAGCA
CAGATTCTCCTGCAGCAGCAACACACCCTGAGTCACCTTTCACAGCAACACCATAGCCTCCCACAGCATC
TTCATCCGCAGCAGGTGATGGTAACCCAGTCTTCCCCCTCATCGGTCCATGGAGGTATCCAAAAGATGAT
GGGCAAACCACAGACCTCTGGTGCCTATGTTCTTAACAAAGTCCCTGTTAAACACCGTCTTGGACATGCA
AGTACTAACCAGAGTGACACGTCTCACTTGCTAAATCAGACTGGTGGTTCTTCTGGGGAAGATTGTCCGG
TATTTTCTACTCCAGGCCATCCAAAAACAATTTACAGCTCTTCAAACTTAAAGGCACCTTCAAAACTTTG
TTCAGGGTCTAAATCTCATGATGTTCAAGAAGTTCTTAAGAAGAAACAGGAAGCAATGAAGTTACAGCAA
GACATGAGGAAAAAGAAACAAGAAATGTTGGAAAAGCAGATAGAATGCCAGAAGATGCTGATTTCTAAAC
TAGAAAAGAACAAAAACATGAAACCAGAAGAAAGAGCAAATATAATGAAGACCTTGAAAGAACTGGGAGA
GAAGATCTCACAATTGAAAGATGAATTAAAAACATCTTCTACAGTCTCCACACCGTCCAAAGTAAAGACA
AAAACAGAGGCCCAGAAGGAGTTGTTGGACACAGAGTTGGACCTCCACAAGAGGCTCTCTTCAGGAGAAG
ATACAACAGAATTACGTAAAAAGCTCAGTCAGTTACAAGTTGAGGCTGCAAGATTAGGTATTTTACCTGT
GGGGAGAGGAAAGACCATATCCTCTCAAGGCCGAGGAAGAGGCAGGGGTCGAGGAAGAGGGAGGGGCTCA
CTGAATCACATGGTGGTGGATCACCGCCCCAAAGCTCTCCCAGGTGGAGGATTCATTGAGGAGGAAAAAG
ATGAGTTGCTTCAGCATTTCTCAGCTACAAACCAAGCATCAAAATTCAAAGACCGTCGGCTACAGATCTC
ATGGCATAAGCCCAAGGTACCATCTATATCTACTGAGACCGAGGAAGAGGAAGTCAAAGAAGAGGAAACA
GAAACCTCAGATTTGTTTTTGCATGATGATGATGATGAAGATGAAGATGAATATGAGTCTCGTTCGTGGC
GAAGATGA

Translation (1005 aa):
MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFE
SLYTKNYLPPLEPVKPEPKPLVQEKEEIKEEVFQEPAEEERDTRKKKYPSPQKSRSESSERRTREKKRED
GKWRDYERYYERNELYREKYDWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDPNRNVEHRERSKFKSERND
LESSYVPVSAPPPSSSEQYSSGAQSIPSTVTVIAPAHHSENTTESWSNYYNNHSSSNSFGRNPPPKRRCR
DYDERGFCVLGDLCQFDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPGPG
PGPGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPPISQSSLINSRDQPGTSAVPNLAPVGARLPPPLPQNL
LYTVSENTYEPDGYNPEAPSITSSGRSQYRQFFSRAQTQRPNLIGLTSGDMDANPRAANIVIQTEPPVPV
SVNSNVTRVVLEPESRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKNHYTNTKLEVKKIPQELNNIT
KLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLWHRENNEQPALQSSA
QILLQQQHTLSHLSQQHHSLPQHLHPQQVMVTQSSPSSVHGGIQKMMGKPQTSGAYVLNKVPVKHRLGHA
STNQSDTSHLLNQTGGSSGEDCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKLQQ
DMRKKKQEMLEKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSTVSTPSKVKT
KTEAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTISSQGRGRGRGRGRGRGS
LNHMVVDHRPKALPGGGFIEEEKDELLQHFSATNQASKFKDRRLQISWHKPKVPSISTETEEEEVKEEET
ETSDLFLHDDDDEDEDEYESRSWRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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