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Report for CCDS9441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9441.1 Public Homo sapiens 13 TDRD3 24 110 108 CCDS HistoryNCBI Gene:81550Re-query CCDS DB by CCDS ID:9441.1Re-query CCDS DB by GeneID:81550See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9441.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000196169.7 ENSP00000196169.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000196169.7Link to Ensembl Protein Viewer:ENSP00000196169.3Re-query CCDS DB by Nucleotide ID:ENST00000196169Re-query CCDS DB by Protein ID:ENSP00000196169
Original member Current member EBI ENST00000377894.6 ENSP00000367126.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377894.6Link to Ensembl Protein Viewer:ENSP00000367126.2Re-query CCDS DB by Nucleotide ID:ENST00000377894Re-query CCDS DB by Protein ID:ENSP00000367126
Original member Current member EBI ENST00000648252.1 ENSP00000498191.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648252.1Link to Ensembl Protein Viewer:ENSP00000498191.1Re-query CCDS DB by Nucleotide ID:ENST00000648252Re-query CCDS DB by Protein ID:ENSP00000498191
Original member Current member NCBI NM_001146071.1 NP_001139543.1 Accepted alive Link to Nucleotide Sequence:NM_001146071.1Link to Protein Sequence:NP_001139543.1Re-query CCDS DB by Nucleotide ID:NM_001146071Re-query CCDS DB by Protein ID:NP_001139543Link to BLAST:NP_001139543.1
Original member Current member NCBI NM_030794.2 NP_110421.1 Accepted alive Link to Nucleotide Sequence:NM_030794.2Link to Protein Sequence:NP_110421.1Re-query CCDS DB by Nucleotide ID:NM_030794Re-query CCDS DB by Protein ID:NP_110421Link to BLAST:NP_110421.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139543.1 651 Q9H7E2-1 651 100% 0 0
NP_110421.1 651 Q9H7E2-1 651 100% 0 0

Chromosomal Locations for CCDS 9441.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 60460467 60460540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60467238 60467379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60483775 60483846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60485799 60485948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60494435 60494575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60509763 60509919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60510630 60510755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60528367 60529217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60535108 60535233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60567525 60567641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1956 nt):
ATGCTGCGATTACAGATGACTGATGGTCATATAAGTTGCACAGCAGTAGAATTTAGTTATATGTCAAAAA
TAAGCCTGAACACACCACCTGGAACTAAAGTTAAGCTCTCAGGCATTGTTGACATAAAAAATGGATTCCT
GCTCTTGAATGACTCTAACACCACAGTTCTTGGTGGTGAAGTGGAACACCTTATTGAGAAATGGGAGTTA
CAGAGAAGCTTATCAAAACACAATAGAAGCAATATTGGAACTGAAGGTGGACCACCGCCTTTTGTGCCTT
TTGGACAGAAGTGTGTATCTCATGTCCAAGTGGATAGCAGAGAACTTGATCGAAGAAAAACATTGCAAGT
TACAATGCCTGTCAAACCTACAAATGATAATGATGAATTTGAAAAGCAAAGGACGGCTGCTATTGCTGAA
GTTGCAAAGAGCAAGGAAACCAAGACATTTGGAGGAGGTGGTGGTGGTGCTAGAAGTAATCTCAATATGA
ATGCTGCTGGTAACCGAAATAGGGAAGTTTTACAGAAAGAAAAGTCAACCAAATCAGAGGGAAAACATGA
AGGTGTCTATAGAGAACTGGTTGATGAGAAAGCTCTGAAGCACATAACGGAAATGGGCTTCAGTAAGGAA
GCATCGAGGCAAGCTCTTATGGATAATGGCAACAACTTAGAAGCAGCACTGAACGTACTTCTTACAAGCA
ATAAACAGAAACCTGTTATGGGTCCTCCTCTGAGAGGTAGAGGAAAAGGCAGGGGGCGAATAAGATCTGA
AGATGAAGAGGACCTGGGAAATGCAAGGCCATCAGCACCAAGCACATTATTTGATTTCTTGGAATCTAAA
ATGGGAACTTTGAATGTGGAAGAACCTAAATCACAGCCACAGCAGCTTCATCAGGGACAATACAGATCAT
CAAATACTGAGCAAAATGGAGTAAAAGATAATAATCATCTGAGACATCCTCCTCGAAATGATACCAGGCA
GCCAAGAAATGAAAAACCGCCTCGTTTTCAAAGAGACTCCCAAAATTCAAAGTCAGTTTTAGAAGGCAGT
GGATTACCTAGAAATAGAGGTTCTGAAAGACCAAGTACTTCTTCAGTATCTGAAGTATGGGCTGAAGACA
GAATCAAATGTGATAGACCGTATTCTAGATATGACAGAACTAAAGATACTTCATATCCTTTAGGTTCTCA
GCATAGTGATGGTGCTTTTAAAAAAAGAGATAACTCTATGCAAAGCAGATCAGGAAAAGGTCCCTCCTTT
GCAGAGGCAAAAGAAAATCCACTTCCTCAAGGATCTGTAGATTATAATAATCAAAAACGTGGAAAAAGAG
AAAGCCAAACATCTATTCCTGATTATTTTTATGACAGGAAATCACAAACAATAAATAATGAAGCTTTCAG
TGGTATAAAAATTGAAAAACATTTTAATGTAAATACTGATTATCAGAATCCAGTTCGAAGTAATAGTTTC
ATTGGTGTTCCAAATGGAGAAGTAGAAATGCCACTGAAAGGAAGACGAATAGGACCTATTAAGCCAGCAG
GACCTGTCACAGCTGTACCCTGTGATGATAAAATATTTTACAATAGTGGGCCCAAACGAAGATCTGGGCC
AATTAAGCCAGAAAAAATACTAGAATCATCTATTCCTATGGAGTATGCAAAAATGTGGAAACCTGGAGAT
GAATGTTTTGCACTTTATTGGGAAGACAACAAGTTTTACCGGGCAGAAGTTGAAGCCCTCCATTCTTCGG
GTATGACAGCAGTTGTTAAATTCATTGACTACGGAAACTATGAAGAGGTGCTACTGAGCAATATCAAGCC
CATTCAAACAGAGGCATGGGAGGAAGAAGGCACCTACGATCAAACTCTGGAGTTCCGTAGGGGAGGTGAT
GGCCAGCCAAGACGATCCACTCGGCCAACCCAACAGTTTTACCAACCACCCCGGGCTCGGAACTAA

Translation (651 aa):
MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGEVEHLIEKWEL
QRSLSKHNRSNIGTEGGPPPFVPFGQKCVSHVQVDSRELDRRKTLQVTMPVKPTNDNDEFEKQRTAAIAE
VAKSKETKTFGGGGGGARSNLNMNAAGNRNREVLQKEKSTKSEGKHEGVYRELVDEKALKHITEMGFSKE
ASRQALMDNGNNLEAALNVLLTSNKQKPVMGPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESK
MGTLNVEEPKSQPQQLHQGQYRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVLEGS
GLPRNRGSERPSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKRDNSMQSRSGKGPSF
AEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYDRKSQTINNEAFSGIKIEKHFNVNTDYQNPVRSNSF
IGVPNGEVEMPLKGRRIGPIKPAGPVTAVPCDDKIFYNSGPKRRSGPIKPEKILESSIPMEYAKMWKPGD
ECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAWEEEGTYDQTLEFRRGGD
GQPRRSTRPTQQFYQPPRARN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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