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Report for CCDS37985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37985.1 Public Mus musculus 19 Opalin 23 108 98 CCDS HistoryNCBI Gene:226115Re-query CCDS DB by CCDS ID:37985.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37985.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087176.7 ENSMUSP00000084422.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087176.7Link to Ensembl Protein Viewer:ENSMUSP00000084422.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000087176Re-query CCDS DB by Protein ID:ENSMUSP00000084422
Original member Current member NCBI NM_153520.2 NP_705740.1 Accepted alive Link to Nucleotide Sequence:NM_153520.2Link to Protein Sequence:NP_705740.1Re-query CCDS DB by Nucleotide ID:NM_153520Re-query CCDS DB by Protein ID:NP_705740Link to BLAST:NP_705740.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705740.1 143 Q7M750 143 100% 0 0

Chromosomal Locations for CCDS 37985.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41063803 41063979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41066499 41066555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41067657 41067779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41069918 41069953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41072196 41072231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41077034 41077036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGAGTTTTTCACTGAACTTTACACTGCCATCGAATACGACATCCTCTCCAGTTGTCACGAGTGCCAAAG
CCACAGACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGT
GGCTTTGCTGTTTACCTTGATCCAGCGAAGAAGAACCATCGATGATGAGCCCGTAGAGGAGACTGAGATA
CCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAGAATCCTAGGCGGTCACCCACACATG
AAATGAACCCACGGGGCAGCCAAGAAGGGCACATATATGTGAAGACTGTCTCGGGAAGCGAGGAGCCCCT
GCCGGACACCTACCGTCCTCCTGAAGAACTAGAAAGGAGAAGAGGACTTTGGTGGCTTGTACCCAGCCTG
AGCCTAGAATGA

Translation (143 aa):
MSFSLNFTLPSNTTSSPVVTSAKATDCGPSIGLAAGIPSLLATALLVALLFTLIQRRRTIDDEPVEETEI
PCEISELYDNPKISENPRRSPTHEMNPRGSQEGHIYVKTVSGSEEPLPDTYRPPEELERRRGLWWLVPSL
SLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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