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Report for CCDS39061.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39061.1 Public Mus musculus 5 Yes1 23 108 98 CCDS HistoryNCBI Gene:22612Re-query CCDS DB by CCDS ID:39061.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39061.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072311.12 ENSMUSP00000072154.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072311.12Link to Ensembl Protein Viewer:ENSMUSP00000072154.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000072311Re-query CCDS DB by Protein ID:ENSMUSP00000072154
Original member Current member EBI ENSMUST00000168707.5 ENSMUSP00000132161.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168707.5Link to Ensembl Protein Viewer:ENSMUSP00000132161.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000168707Re-query CCDS DB by Protein ID:ENSMUSP00000132161
Original member Current member EBI ENSMUST00000202543.3 ENSMUSP00000144001.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202543.3Link to Ensembl Protein Viewer:ENSMUSP00000144001.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202543Re-query CCDS DB by Protein ID:ENSMUSP00000144001
Original member Current member NCBI NM_001205132.1 NP_001192061.1 Accepted alive Link to Nucleotide Sequence:NM_001205132.1Link to Protein Sequence:NP_001192061.1Re-query CCDS DB by Nucleotide ID:NM_001205132Re-query CCDS DB by Protein ID:NP_001192061Link to BLAST:NP_001192061.1
Original member Current member NCBI NM_001205133.1 NP_001192062.1 Accepted alive Link to Nucleotide Sequence:NM_001205133.1Link to Protein Sequence:NP_001192062.1Re-query CCDS DB by Nucleotide ID:NM_001205133Re-query CCDS DB by Protein ID:NP_001192062Link to BLAST:NP_001192062.1
Original member Current member NCBI NM_009535.3 NP_033561.1 Accepted alive Link to Nucleotide Sequence:NM_009535.3Link to Protein Sequence:NP_033561.1Re-query CCDS DB by Nucleotide ID:NM_009535Re-query CCDS DB by Protein ID:NP_033561Link to BLAST:NP_033561.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192061.1 541 Q04736 541 100% 0 0
NP_001192062.1 541 Q04736 541 100% 0 0
NP_033561.1 541 Q04736 541 100% 0 0

Chromosomal Locations for CCDS 39061.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 32640339 32640603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32645008 32645107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32651657 32651755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32652963 32653066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32653157 32653306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32655106 32655261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32655428 32655607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32659035 32659111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32660752 32660905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32664269 32664400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32684551 32684759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGGCTGCATTAAAAGTAAAGAAAACAAAAGTCCAGCCATAAAATACACACCGGAAAATCTTACAGAGC
CTGTAAGCCCAAGTGCCAGTCATTATGGAGTGGAACATGCTACAGTTGCCCCGACCTCTTCCACAAAGGG
AGCATCAGTTAATTTTAACAGTCTTTCCATGACACCCTTTGGAGGGTCCTCAGGGGTGACTCCTTTTGGA
GGAGCGTCTTCCTCATTCTCAGTGGTGTCAAGTTCATATCCTACAGGTTTAACAGGTGGTGTCACTATAT
TTGTGGCCTTGTATGATTATGAAGCTAGAACTACAGAAGACCTTTCCTTTAAGAAGGGTGAACGATTTCA
AATAATTAACAATACGGAAGGAGACTGGTGGGAAGCAAGATCAATTGCTACCGGAAAGAGTGGTTATATC
CCTAGCAATTACGTAGTGCCTGCAGATTCCATTCAGGCAGAAGAATGGTATTTTGGCAAAATGGGGAGAA
AAGATGCGGAAAGATTACTTCTGAATCCTGGGAATCAGCGAGGTATTTTCTTAGTAAGAGAAAGTGAAAC
TACTAAAGGTGCTTACTCCCTCTCAATCCGTGATTGGGATGAGGTGAGGGGTGACAATGTGAAGCATTAC
AAGATCAGAAAACTTGACAATGGTGGCTACTACATCACGACCAGAGCTCAGTTTGATACACTGCAGAAGC
TGGTGAAGCACTACACAGAACATGCTGATGGATTATGCCACAAGTTAACAACTGTGTGTCCTACTGTGAA
ACCCCAGACTCAAGGTCTGGCAAAAGATGCTTGGGAAATCCCTCGAGAATCATTGCGACTAGAGGTGAAA
CTAGGTCAAGGATGCTTTGGGGAAGTGTGGATGGGAACATGGAATGGAACTACAAAAGTAGCAATCAAAA
CACTAAAGCCAGGTACAATGATGCCAGAAGCATTCCTTCAAGAAGCTCAGATAATGAAAAAGCTAAGACA
CGATAAACTTGTTCCACTCTATGCAGTTGTTTCTGAAGAGCCCATTTATATTGTCACCGAGTTTATGTCA
AAAGGAAGCTTGTTAGATTTCCTTAAAGAAGGAGATGGAAAGTATTTGAAGCTTCCACAGCTGGTTGATA
TGGCTGCTCAGATCGCTGATGGCATGGCGTATATTGAAAGAATGAACTATATTCACCGAGATCTCCGAGC
TGCTAATATTCTTGTAGGAGAAAATCTTATATGCAAAATAGCAGATTTTGGCTTAGCAAGATTAATTGAA
GACAATGAATACACGGCAAGACAAGGTGCAAAATTTCCAATCAAGTGGACAGCTCCTGAGGCTGCTCTGT
ATGGTCGATTTACAATAAAGTCAGATGTGTGGTCATTTGGAATTCTACAGACAGAGCTGGTAACAAAAGG
AAGAGTGCCATATCCAGGTATGGTAAACCGTGAAGTATTGGAACAAGTAGAGCGGGGATACAGAATGCCT
TGCCCCCAGGGCTGTCCCGAATCCCTCCATGAATTGATGAATCTTTGCTGGAAGAAGGATCCTGATGAAA
GACCAACATTTGAATATATTCAGTCCTTCTTGGAAGACTACTTCACTGCTACAGAGCCACAGTACCAACC
AGGAGAAAATTTATAA

Translation (541 aa):
MGCIKSKENKSPAIKYTPENLTEPVSPSASHYGVEHATVAPTSSTKGASVNFNSLSMTPFGGSSGVTPFG
GASSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYI
PSNYVVPADSIQAEEWYFGKMGRKDAERLLLNPGNQRGIFLVRESETTKGAYSLSIRDWDEVRGDNVKHY
KIRKLDNGGYYITTRAQFDTLQKLVKHYTEHADGLCHKLTTVCPTVKPQTQGLAKDAWEIPRESLRLEVK
LGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVSEEPIYIVTEFMS
KGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGENLICKIADFGLARLIE
DNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILQTELVTKGRVPYPGMVNREVLEQVERGYRMP
CPQGCPESLHELMNLCWKKDPDERPTFEYIQSFLEDYFTATEPQYQPGENL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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