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Report for CCDS22983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22983.1 Public Mus musculus 9 Siae 23 108 98 CCDS HistoryNCBI Gene:22619Re-query CCDS DB by CCDS ID:22983.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22983.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000215474.1 ENSMUSP00000149505.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215474.1Link to Ensembl Protein Viewer:ENSMUSP00000149505.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215474Re-query CCDS DB by Protein ID:ENSMUSP00000149505
Original member Current member NCBI NM_011734.4 NP_035864.2 Accepted alive Link to Nucleotide Sequence:NM_011734.4Link to Protein Sequence:NP_035864.2Re-query CCDS DB by Nucleotide ID:NM_011734Re-query CCDS DB by Protein ID:NP_035864Link to BLAST:NP_035864.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035864.2 541 P70665-1 541 100% 0 0

Chromosomal Locations for CCDS 22983.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 37613860 37613926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37616800 37616961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37622899 37623074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37627700 37627838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37631349 37631604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37632958 37633067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37633621 37633754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37642640 37642797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37644752 37644947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37646297 37646524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGTTTCCCCGGGGCCTGTGTTTGGGATAGTGCTGCTCATAATCGCGCGAGTCAGCAGAAGTGCAGGTA
TTGGTTTTCGCTTTGCTTCATACATCGATAATTACATGGTGCTGCAGAAGGAGCCTTCAGGGGCTGTGAT
CTGGGGCTTTGGTACACCTGGAGCCACAGTGACAGTGACCTTGTGCCAAGGTCAGGAAACCATCATGAAG
AAAGTGACCAGTGTGAAAGAACCCTCCAACACCTGGATGGTGGTACTGGACCCTATGAAGCCTGGGGGAC
CTTTTGAAGTGATGGCGCAACAGACTTTGGGGACAATGAATTTCACCCTGAGAGTCCATGATGTCTTATT
TGGAGATGTCTGGCTTTGCAGTGGGCAGAGTAACATGCAGATGACTGTTTCACAGATCTTTAACGCCTCA
AAGGAGTTGTCCGACACTGCTGCCTACCAGTCTGTGCGCATCTTCTCTGTCTCCCTCATCCAATCAGAGG
AGGAGTTGGATGACCTTACTGAGGTTGACCTGTCATGGTCCAAGCCCACCGCAGGAAACTTGGGCCATGG
AAATTTCACTTACATGTCTGCGGTGTGCTGGCTCTTTGGGCGTTACCTGTATGACACTCTGCAATATCCC
ATTGGGTTGGTCTCCTCCAGTTGGGGTGGGACGTACATTGAAGTCTGGTCATCTAGAAGGACACTGAAAG
CCTGTGGAGTCCCTAATACAAGGGATGAAAGAGTTGGTCAGCCCGAGATAAAGCCCATGAGGAATGAATG
TAACAGTGAGGAGTCCTCATGTCCTTTTAGGGTTGTCCCATCTGTTCGTGTGACTGGACCGACAAGACAC
TCCGTCCTTTGGAACGCCATGATCCATCCACTGCAAAACATGACTTTGAAAGGGGTGGTGTGGTACCAGG
GAGAGTCCAATGCGGATTATAACAGGGACCTGTACACCTGCATGTTTCCTGAACTCATTGAAGACTGGCG
CCAGACCTTCCACTACGGCTCCCAGGGTCAGACAGATCGTTTCTTTCCATTTGGGTTTGTCCAGCTGTCT
TCATACATGTTAAAGAACTCATCGGATTATGGATTTCCAGAGATCCGTTGGCATCAAACTGCAGACTTTG
GCCATGTCCCCAACCCGAAGATGCCTAATACTTTTATGGCTGTCGCTATTGACCTCTGTGATAGAGACTC
ACCCTTTGGAAGTATCCACCCTCGAGACAAACAGACTGTGGCCTATCGTCTGCACTTGGGTGCTCGAGCT
GTGGCATATGGTGAGAAAAATTTGACCTTTCAAGGACCACTACCTAAGAAGATAGAACTCTTGGCTTCCA
ATGGCCTGCTCAACCTCACATATGACCAGGAAATCCAGGTGCAAATGCAAGATAACAAAACATTTGAGAT
CTCCTGTTGTAGTGACCGTCATTGCAAATGGCTTCCAGCTCCTGTTAACACTTTCTCCACCCAGACTCTG
ATTTTGGATCTCAATGCTTGTCTTGGCACAGTGGTTGCTGTTCGCTATGCCTGGACCACATGGCCTTGTG
AATATAAGCAATGTGCTGTTTACCACACCAGCAGTATGTTGCCAGCTCCTCCCTTCATTGCTCAAATTTC
ACACAGGGGTATCTAA

Translation (541 aa):
MVSPGPVFGIVLLIIARVSRSAGIGFRFASYIDNYMVLQKEPSGAVIWGFGTPGATVTVTLCQGQETIMK
KVTSVKEPSNTWMVVLDPMKPGGPFEVMAQQTLGTMNFTLRVHDVLFGDVWLCSGQSNMQMTVSQIFNAS
KELSDTAAYQSVRIFSVSLIQSEEELDDLTEVDLSWSKPTAGNLGHGNFTYMSAVCWLFGRYLYDTLQYP
IGLVSSSWGGTYIEVWSSRRTLKACGVPNTRDERVGQPEIKPMRNECNSEESSCPFRVVPSVRVTGPTRH
SVLWNAMIHPLQNMTLKGVVWYQGESNADYNRDLYTCMFPELIEDWRQTFHYGSQGQTDRFFPFGFVQLS
SYMLKNSSDYGFPEIRWHQTADFGHVPNPKMPNTFMAVAIDLCDRDSPFGSIHPRDKQTVAYRLHLGARA
VAYGEKNLTFQGPLPKKIELLASNGLLNLTYDQEIQVQMQDNKTFEISCCSDRHCKWLPAPVNTFSTQTL
ILDLNACLGTVVAVRYAWTTWPCEYKQCAVYHTSSMLPAPPFIAQISHRGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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