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Report for CCDS49852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49852.1 Public Mus musculus 16 Tigit 23 108 98 CCDS HistoryNCBI Gene:100043314Re-query CCDS DB by CCDS ID:49852.1Re-query CCDS DB by GeneID:100043314See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49852.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096065.5 ENSMUSP00000093770.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096065.5Link to Ensembl Protein Viewer:ENSMUSP00000093770.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096065Re-query CCDS DB by Protein ID:ENSMUSP00000093770
Original member NCBI NM_001146325.1 NP_001139797.1 Updated not alive Link to Nucleotide Sequence:NM_001146325.1Link to Protein Sequence:NP_001139797.1Re-query CCDS DB by Nucleotide ID:NM_001146325Re-query CCDS DB by Protein ID:NP_001139797
Current member NCBI NM_001146325.2 NP_001139797.1 Accepted alive Link to Nucleotide Sequence:NM_001146325.2Link to Protein Sequence:NP_001139797.1Re-query CCDS DB by Nucleotide ID:NM_001146325Re-query CCDS DB by Protein ID:NP_001139797Link to BLAST:NP_001139797.1

Chromosomal Locations for CCDS 49852.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 43649001 43649234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43659439 43659536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43661976 43662305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43664024 43664087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGCATGGCTGGCTGCTCCTGGTCTGGGTCCAGGGGCTGATACAGGCTGCCTTCCTCGCTACAGGAGCCA
CAGCAGGCACGATAGATACAAAGAGGAACATCTCTGCAGAGGAAGGTGGCTCTGTCATCTTACAGTGTCA
CTTCTCCTCTGACACAGCTGAAGTGACCCAAGTCGACTGGAAGCAGCAGGACCAGCTTCTGGCCATTTAT
AGTGTTGACCTGGGGTGGCATGTCGCTTCAGTCTTCAGTGATCGGGTGGTCCCAGGCCCCAGCCTAGGCC
TCACCTTCCAGTCTCTGACAATGAATGACACGGGAGAGTACTTCTGTACCTATCATACGTATCCTGGTGG
GATTTACAAGGGGAGAATATTCCTGAAGGTCCAAGAAAGCTCAGTGGCTCAGTTCCAGACTGCCCCGCTT
GGAGGAACCATGGCTGCTGTGCTGGGACTCATTTGCTTAATGGTCACAGGAGTGACTGTACTGGCTAGAA
AGAAGTCTATTAGAATGCATTCTATAGAAAGTGGCCTTGGGAGAACAGAAGCGGAGCCACAGGAATGGAA
CCTGAGGAGTCTCTCATCCCCTGGAAGCCCTGTCCAGACACAAACTGCCCCTGCTGGTCCCTGTGGAGAG
CAGGCAGAAGATGACTATGCTGACCCACAGGAATACTTTAATGTCCTGAGCTACAGAAGCCTAGAGAGCT
TCATTGCTGTATCGAAGACTGGCTAA

Translation (241 aa):
MHGWLLLVWVQGLIQAAFLATGATAGTIDTKRNISAEEGGSVILQCHFSSDTAEVTQVDWKQQDQLLAIY
SVDLGWHVASVFSDRVVPGPSLGLTFQSLTMNDTGEYFCTYHTYPGGIYKGRIFLKVQESSVAQFQTAPL
GGTMAAVLGLICLMVTGVTVLARKKSIRMHSIESGLGRTEAEPQEWNLRSLSSPGSPVQTQTAPAGPCGE
QAEDDYADPQEYFNVLSYRSLESFIAVSKTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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