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Report for CCDS59541.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59541.1 Public Mus musculus 1 Ascl5 23 108 98 CCDS HistoryNCBI Gene:226439Re-query CCDS DB by CCDS ID:59541.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59541.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000180436.1 ENSMUSP00000137746.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180436.1Link to Ensembl Protein Viewer:ENSMUSP00000137746.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180436Re-query CCDS DB by Protein ID:ENSMUSP00000137746
Original member NCBI NM_001270609.1 NP_001257538.1 Updated not alive Link to Nucleotide Sequence:NM_001270609.1Link to Protein Sequence:NP_001257538.1Re-query CCDS DB by Nucleotide ID:NM_001270609Re-query CCDS DB by Protein ID:NP_001257538
Current member NCBI NM_001270609.2 NP_001257538.1 Accepted alive Link to Nucleotide Sequence:NM_001270609.2Link to Protein Sequence:NP_001257538.1Re-query CCDS DB by Nucleotide ID:NM_001270609Re-query CCDS DB by Protein ID:NP_001257538Link to BLAST:NP_001257538.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257538.1 188 M0QWB7 188 100% 0 0

Chromosomal Locations for CCDS 59541.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 136050804 136051370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGAACAGTAACTTCTGCCGAGCTCTGGTGGACCGTGGGCCCCCGGGGGGCATGCAGCTAGGTGTCGTGG
CCCCTGCTGGACAGACGCCGCTGGCAGCCACCGAACCCTTGAGCAACGTACCCTTTCTATTGTACCCCGG
CCACTCCGAGCCGCCTTACTACGACGCCTACACTGGGGTGTTCCCCTACGTGCCCTTTCCCGGCGCCTTC
GGGGTTTACGACTACCCGTTCGAGCCTGCCTTCATCCAGAAGCGCAACGAGCGAGAGCGGCAGCGCGTCA
AGTGCGTGAATGAGGGCTACGCGCGCCTCCGCGGCCACCTCCCCGGCGCCCTGACTGAGAAGCGGCTCAG
CAAGGTGGAGACACTGCGCGCCGCCATCCGCTACATCAAGTACCTGCAGGAGCTGTTGAGCGCCACCCCC
GACGGCGCGCCACCTCCCGCCACCTCCCCGCCGCCCGCCCACACGGGCCACAGCAACGTGCCGCAGCCCT
CTTCCTTGGTGGCCGAGTCCAGTGGATCCCCCTTTTCCTCGTCGCCTTTTTTGGAGTCGGAGGAACCCAG
CCTTTGA

Translation (188 aa):
MNSNFCRALVDRGPPGGMQLGVVAPAGQTPLAATEPLSNVPFLLYPGHSEPPYYDAYTGVFPYVPFPGAF
GVYDYPFEPAFIQKRNERERQRVKCVNEGYARLRGHLPGALTEKRLSKVETLRAAIRYIKYLQELLSATP
DGAPPPATSPPPAHTGHSNVPQPSSLVAESSGSPFSSSPFLESEEPSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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