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Report for CCDS15494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15494.1 Public Mus musculus 1 Arhgap30 23 108 98 CCDS HistoryNCBI Gene:226652Re-query CCDS DB by CCDS ID:15494.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15494.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056449.8 ENSMUSP00000059389.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056449.8Link to Ensembl Protein Viewer:ENSMUSP00000059389.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000056449Re-query CCDS DB by Protein ID:ENSMUSP00000059389
Original member Current member NCBI NM_001005508.2 NP_001005508.2 Accepted alive Link to Nucleotide Sequence:NM_001005508.2Link to Protein Sequence:NP_001005508.2Re-query CCDS DB by Nucleotide ID:NM_001005508Re-query CCDS DB by Protein ID:NP_001005508Link to BLAST:NP_001005508.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005508.2 1093 Q640N3-2 1093 99.634% 0 4

Chromosomal Locations for CCDS 15494.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171389267 171389363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171397475 171397577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171400556 171400700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171401925 171402007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171402157 171402264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171403213 171403340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171403781 171403955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171404034 171404137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171404221 171404298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171404810 171405178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171407358 171407635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171407728 171409341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3282 nt):
ATGAAGTCTCGGCAGAAAGGAAAGAAGAAGGGCAGCTCTAAGGAACGGGTGTTTGGGTGTGACCTACGTG
AGCATCTACAGCACTCGGGCCAGGAAGTGCCCCAGGTGCTACGGAGCTGTGCAGAGTTTGTGCAAGAGTA
TGGAGTGGTGGATGGGATCTACCGCCTCTCAGGGGTCTCCTCTAACATCCAGAAGCTCCGGCAGGAGTTT
GAGACGGAGCGGAAGCCAGACCTGCGCCGGGATGTTTATCTCCAGGACATTCACTGCGTCTCTTCCTTGT
GCAAGGCCTACTTCAGAGAACTCCCAGATCCCCTCCTCACTTATCGGCTCTATGACAAGTTTGCTGAGGC
AGTGGCCGTGCAGCTAGAGCCAGAGCGATTGGTCAAGATCCTAGAAGTGCTTCAAGAACTCCCTATCCAA
AACTACAGGACCCTGGAATTCCTTATGCGCCACTTGGTCCACATGGCCTCATTTAGTGCCCAAACCAACA
TGCATGCTCGCAATCTGGCAATTGTGTGGGCCCCCAACCTGCTGAGGTCTAAGGACATAGAGGCCTCAGG
CTTCAATGGGACAGCAGCGTTCATGGAGGTTCGAGTGCAGTCCATTGTTGTGGAGTTCATCCTTACCCAT
GTGGACCAGCTCTTTAGGGGTGACTCCCTCTCTGCTGGTGTAGACTTGGAGAGTGGATGGAAATCACTTC
CAGGAGCCCGGGCATCAGGCAGCTCCGAGGACCTCATGCCCACCTCTCTTCCCTACCACTTGCCCAGCAT
CTTGCAGGCTGGGGATGGACCTCCACAGATCCGACCCTACCATACTATTATTGAGATTGCGGAACACAAG
AGAAAGGGGTCATTGAAGGTCAGGAAATGGCGCTCTATCTTCAATTTGGGTCGATCTGGACACGAGACAA
AACGTAAACTTCCGCTGAGGGTTGAGGACAGGGAAGAAAAATCCAGTAAGGGGACACTGCGGCCTGCCAA
AAGCATGGACTCGCTGAGTGCTGCCGCTGGGGCCAGTGACGAGCCGGAGGGGCTGGTGGGGTCCAGCAGT
TCTCAGCCAAGCTCACTGATGCCTGAGAGCTTGGAGAGTAATTCTATGGAAGGTGAACAGGAGCCTGAAG
CAGAGGCACCGGGCAGTGCCAATTCTGAGCCGGGAACTCCACGAGCCGGGCGATCAGCTGTTCGGGCCTT
AGGTAGCAGTAGAGCAGAGCGTTGTGCTGGTGTCCACATCTCAGACCCTTACAACGTCAACCTCCCTCTG
CACATAACCTCCATCCTCAGTGTTCCTCCAAACATCATCTCTAATGTCTCCTTGGTCAGGCTCACCCGAG
GCCTTGAGTGCCCTGCCCTACAACCCCGGCCAAGCCCTGCCTTGGGTCCTGGCCCCCCAGATGAGAAATC
AGAGGCAAGATCAGTCCCAGGTCCCCTGGATGACTCGAGCCCTGCAGCCATGACTCCTGCCCTAGAGGAC
TCCCTGTCCCAGGAAGTGCAGGACTCCTTCTCCTTCCTAGAGGATTTGAGCAGCTCAGAGCCTGAGTGGG
TGGGGGTGGAGGAGAGGGAGGTGGCCAAGGCAGAAGCCGCAGGAGCAGCAGGAGCAGCAGCTTTCTCCCT
TGGGGAGGACGACCCTGGGATGGGCTACCTGGAGGAGCTGCTGAGAGTTGGGCCTCAGGTAGAAGAGTTC
TCTGTGGAGCCACCCCTGGATGACCTGTCTCTGGATGATACTCAGTATGTCCTGGCTCCTAACTGCTGCT
CCCTTGATTCTGCGGTTTCCACACCTGACGTAGAAGAGGACTATGGGGAAGAAGTCTTCTTGAGTGCCTA
TGATGATCTGAGTCCCCTTCTGGGGCCTAAACCCATCAACTGGGAAGGTGTAGGGAGTCTGGAGGAAGAG
GCAGCAGGGTGTGGGAAACAACCTCCAACACAGGATGAAGAAGAACAGGCCTGCTCAGAAACCAGGCAGG
AAAAGGAGGCTAAGCCCCGGAGCACATCAGATAACCGGGAAGAAGCAGAGGCAACTCCAGAGACTGAGAT
GGAGGCTGGAAAGGCTGATGCGGAAGGAGGGGAGGCTGAGAGAAGCCAAAAGGTGATGGATAGTTTTAAA
GAAGGGAGTAGGGAAGAGCTAGAGGCCAAGGAAGAAAATTCCGAAGGTCGAGAGGTTGAAAGTATAAAGG
AGACCAAGGATGTGGAAAAAATAATAGGAGAACCGGGTAAAGATGAGGAGAGAGAGATTGGGAGAGAAGA
AGGAGCTGAGAAAGGAGATGACACCCCAGTAGACTCTGATATGGATCCAGAGCATGTGTTCCAGGAAGAC
CTGGTTCTTGAGGAGAGCTGGGAAGTTGTCCACAAGCATGAGGCTGAGAAAGGCAGAGAGAGTGAGACCA
AAGAGCTGAGGAGGAAGAGTGACCTTAAGTCAAGAGAAGACCAAGGACACAGTGAAGACAGTGGAAGTCC
AGAAGAGGGTGATGATAGGAAGGAAGGGGTTTTCAGCAAGGAACAAAAAAGTATAGACGTAGAAACTGAA
GTCATGAGAGGTGTTGGTGACCACTTAGAAGAGGGGGCCCTCTCTGAAGGGCCAGGTGTCGAGTTACTGA
GGGTTGACAGTACAGAAGAAATCAATGAACAGACCTCTGAGATGAAACAAGCCCCGCTACAGCCATCTGA
ACCAGAGGGCATGGAGGCTGAGGGACAGCTTAATCCTGAGACATGTGACCTGTATTCTTGTCCCTGTGGG
TCAGCTGGTGGTGTGGGCATGCGTCTGGCTTCCACCCTAGTTCAGGTCCGACAGGTCCGCTCTGTCCCTG
TAGTGCCCCCCAAACCACAGTTTGCCAAGATGCCCAGTGCAATGTGTAGCAAGATCCATGTAGCACCTGC
AAGCCCATGTCCAAGGCCTGGTAGGCTTGATGGGACTCCTGGAGAAAAAGCTTGGGGTTCTCGAGCTTCC
TGGAGGAATGGGGGCAGTCTTTCTTTTGATGCTGCTGTGGCCCTGGCCCGGGAACGCCAGAGGACCGAGT
CTCAGGGAGTTCTGCGGACCCAGACCTGTACTGGAGGTGGGGATTATAGTCTCAGCTCCAGAACCCCTCC
TTGTAGCATGATCCTTGCCCATTCTTCCCGGCCCCTTAGCTGTTTGGAACGCCCACCTGAAGGCACAGAG
GGGTCTGAGCCCAGGAGTCGGCTTAGTCTGCCCCCTAGAGAGCTTCACCCTGTTGTCCCTCTTGTGGCCC
CTCAGCGCCAGACATATGCTTTTGAAACACAGACTAATCATGGGAAAGATGAAGGGGTATGA

Translation (1093 aa):
MKSRQKGKKKGSSKERVFGCDLREHLQHSGQEVPQVLRSCAEFVQEYGVVDGIYRLSGVSSNIQKLRQEF
ETERKPDLRRDVYLQDIHCVSSLCKAYFRELPDPLLTYRLYDKFAEAVAVQLEPERLVKILEVLQELPIQ
NYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAPNLLRSKDIEASGFNGTAAFMEVRVQSIVVEFILTH
VDQLFRGDSLSAGVDLESGWKSLPGARASGSSEDLMPTSLPYHLPSILQAGDGPPQIRPYHTIIEIAEHK
RKGSLKVRKWRSIFNLGRSGHETKRKLPLRVEDREEKSSKGTLRPAKSMDSLSAAAGASDEPEGLVGSSS
SQPSSLMPESLESNSMEGEQEPEAEAPGSANSEPGTPRAGRSAVRALGSSRAERCAGVHISDPYNVNLPL
HITSILSVPPNIISNVSLVRLTRGLECPALQPRPSPALGPGPPDEKSEARSVPGPLDDSSPAAMTPALED
SLSQEVQDSFSFLEDLSSSEPEWVGVEEREVAKAEAAGAAGAAAFSLGEDDPGMGYLEELLRVGPQVEEF
SVEPPLDDLSLDDTQYVLAPNCCSLDSAVSTPDVEEDYGEEVFLSAYDDLSPLLGPKPINWEGVGSLEEE
AAGCGKQPPTQDEEEQACSETRQEKEAKPRSTSDNREEAEATPETEMEAGKADAEGGEAERSQKVMDSFK
EGSREELEAKEENSEGREVESIKETKDVEKIIGEPGKDEEREIGREEGAEKGDDTPVDSDMDPEHVFQED
LVLEESWEVVHKHEAEKGRESETKELRRKSDLKSREDQGHSEDSGSPEEGDDRKEGVFSKEQKSIDVETE
VMRGVGDHLEEGALSEGPGVELLRVDSTEEINEQTSEMKQAPLQPSEPEGMEAEGQLNPETCDLYSCPCG
SAGGVGMRLASTLVQVRQVRSVPVVPPKPQFAKMPSAMCSKIHVAPASPCPRPGRLDGTPGEKAWGSRAS
WRNGGSLSFDAAVALARERQRTESQGVLRTQTCTGGGDYSLSSRTPPCSMILAHSSRPLSCLERPPEGTE
GSEPRSRLSLPPRELHPVVPLVAPQRQTYAFETQTNHGKDEGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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