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Report for CCDS15534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15534.1 Public Mus musculus 1 Ifi205 23 108 98 CCDS HistoryNCBI Gene:226695Re-query CCDS DB by CCDS ID:15534.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15534.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059226.6 ENSMUSP00000062409.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059226.6Link to Ensembl Protein Viewer:ENSMUSP00000062409.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000059226Re-query CCDS DB by Protein ID:ENSMUSP00000062409
Original member Current member NCBI NM_172648.3 NP_766236.2 Accepted alive Link to Nucleotide Sequence:NM_172648.3Link to Protein Sequence:NP_766236.2Re-query CCDS DB by Nucleotide ID:NM_172648Re-query CCDS DB by Protein ID:NP_766236Link to BLAST:NP_766236.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766236.2 404 Q8CGE8 404 100% 0 0

Chromosomal Locations for CCDS 15534.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 174012244 174012288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174014959 174015147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174017234 174017656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174026528 174026686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174027193 174027326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174028198 174028462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGGAGAATGAATATAAGAGACTTGTTCTGCTGGAAGGACTTGAATGTATCAATAAGCATCAATTCAATT
TATTTAAGTCATTGATGGTCAAAGATTTAAATCTGGAAGAAGACAACCAAGAGAAATATACCACGTTTCA
GATTGCTAACATGATGGTAAAGAAATTTCCAGCTGATGCTGGATTGGACAGACTGATCAACTTTTGTGAA
CGTGTACCAACTCTTAAAAAACGTGCTGAAATTCTTAAAAAAGAGAGATCAGAAGTAACAGAAGAAACAT
CACTGGAAATAAATAGGCAAGAAGCAAGTCCTGCAACACCTACATCAACTACAAGCCACATGTTAGCATC
TGAAAGAGGCAAGACTTCCACAACCCAGGAAGAGACTTCCACAGCCCAGAAAAGGAAAGGTATGAGTGAA
GAAAAGACTGACGTGAAGAAGATCAAGGCATCTGGGAAAGCAGATCAGCCTCCCTGTTGTGAAGGACCCA
CAGCCACATGCCAGTCACCAATATCCCAGGTCTCATCTTCGGCTTCATCTAACATTCCTTCGGCTAAGAA
CCAAAAATCACAACCCCAGAACCAGAACATTCCCAGAGGTGCTGTTCTCCACTCAGAGCCCCTGACAGTG
ATGGTGCTCACTGCAACAGACCCGTTTGAATATGAATCACCAGAACATGAAGTAAAGAACATGTTTCATG
CTACAGTGGCTACAGTGAGCCAGTATTTCCATGTGAAAGTTTTCAACATCGATTTGAAAGAGAAGTTCAC
AAAAAATAATTTTATCACCATATCCAATTACTTTGAGAGCAAAGGCATCCTGGAGATCAATGAGACTTCC
TCTGTGTTAGAGGCTGCTCCTAAACAAATGATTGAAGTGCCCAACTGTATTACCAGAAATGCAAATGCCA
GTCCTAAGATCTGTGATATTCAAAAGGGTACTTCTGGAACAGTGTTCTATGGAGTGTTTACATTACACAA
GAAAAAAGTGAAAACACAGAACACAAGCTATGAAATAAAAGATGGTTCAGGAAGCATAGAAGTGGTGGGG
AGTGGACAATGGCACAACATCAACTGTAAGGAAGGAGATAAGCTCCACCTCTTCTGCTTTCACCTGAAAA
GAGAAAGAGGACAACCAAAGTTAGTGTGTGGAGACCACAGTTTCGTCAAGGTCACCAAGGCTGGGAAAAA
AAAAGAAGCATCAACTGTCCAGTGA

Translation (404 aa):
MENEYKRLVLLEGLECINKHQFNLFKSLMVKDLNLEEDNQEKYTTFQIANMMVKKFPADAGLDRLINFCE
RVPTLKKRAEILKKERSEVTEETSLEINRQEASPATPTSTTSHMLASERGKTSTTQEETSTAQKRKGMSE
EKTDVKKIKASGKADQPPCCEGPTATCQSPISQVSSSASSNIPSAKNQKSQPQNQNIPRGAVLHSEPLTV
MVLTATDPFEYESPEHEVKNMFHATVATVSQYFHVKVFNIDLKEKFTKNNFITISNYFESKGILEINETS
SVLEAAPKQMIEVPNCITRNANASPKICDIQKGTSGTVFYGVFTLHKKKVKTQNTSYEIKDGSGSIEVVG
SGQWHNINCKEGDKLHLFCFHLKRERGQPKLVCGDHSFVKVTKAGKKKEASTVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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