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Report for CCDS14951.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14951.1 Public Mus musculus 1 Pms1 23 108 98 CCDS HistoryNCBI Gene:227099Re-query CCDS DB by CCDS ID:14951.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14951.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027267.13 ENSMUSP00000027267.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027267.13Link to Ensembl Protein Viewer:ENSMUSP00000027267.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027267Re-query CCDS DB by Protein ID:ENSMUSP00000027267
Original member Current member NCBI NM_153556.2 NP_705784.1 Accepted alive Link to Nucleotide Sequence:NM_153556.2Link to Protein Sequence:NP_705784.1Re-query CCDS DB by Nucleotide ID:NM_153556Re-query CCDS DB by Protein ID:NP_705784Link to BLAST:NP_705784.1

Chromosomal Locations for CCDS 14951.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 53189334 53189498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53192100 53192260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53194928 53195058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53196823 53197302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53206562 53207412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53207576 53207719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53207963 53208085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53216231 53216347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53256629 53256792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53267828 53267930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53275070 53275252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53281941 53282072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2754 nt):
ATGAAACAGTTGCCTGCAGCAACAGTTCGCCTCCTGTCCAGTTCTCAGACAATCACGTCAGTGGTCAGCG
TTGTGAAAGAGCTCATTGAAAACTCCTTGGATGCCGGAGCCACCAGCATTGAAGTTAAACTGGAGAACTA
TGGATTTGATAAAATTGAGATTCGGGACAATGGTGAGGGCATCAAGGCTGTAGATGTCCCTGTAATGGCA
GTGAAGTACTACACCTCGAAGATCAGCAGTCATGAAGACCTTGGAAATCTGACAACTTATGGTTTTCGTG
GTGAAGCCTTGGGGTCAATATGTAATGTTGCGGAGGTGGTAGTTACAACAAGGACATCTGCTGATGACTT
TAGCACTCAGTATGTTTTAGATGGCAGTGGCCACATACTTTCTCAGAAGCCTTCACATCTTGGTCAAGGT
ACAACTGTAACTGCTCTAAAGTTGTTTAAGAATCTGCCTGTAAGAAAACAATTTTACTCAACAGCTAAAA
AGTGTAAAGATGAACTAAAAAATGTACAGGACCTTCTCATAAGCTACGGTGTCCTGAAACCTGATGTGAG
GATTACTTTTGTACATAATAAGGCAGTTATTTGGCAGAAAAGCAGAGTTCCAGATCACAGGATGGCTCTA
ATGTCGGTTCTGGGAACTGCTGTCATGGGCAACATGGAATCTGTTGAGCAGCACTGTGAACAGTCGCAGA
TTTACCTAAGTGGATTCTTCCCAAAGCACGATGCAGACCACAATTCCACAAGTCTTTCAACCCCAGAGAG
AAGTTTCATCTTTATTAATAGTCGGCCAGTACATCAAAAAGATATACTAAAGTTAATTCGACGCTATTAT
AATCTGAAGTGCCTAAAGGAGTCTACCCGCTTGTATCCCATTTTCTTTCTGAAAATTGATGTTCCATCAG
CTGAGGTGGATATAAATCTAACACCAGATAAAAGTCAAGTGTTATTACAGAATAAGGAATCTGTTTTAAT
TGCTCTTGAAAATCTGATGATGACCTGTTACGGACCACTACCCACTACAGAGTCTTCTGAAAATAACAGA
GTAGATATTTCCTCAGCCAACATGGTTGTTAGTCAAACAGCCGAAACAGATGTGCTTTTTAATAAAATGG
AATCATTTGGAAATAATTATCCAAATGCTGATACTTCGGCTATTCACTTCCAAAAGGATGAATCTAGAAA
AAACATTGATCATCATTTAAATGAACAGATAAATATAGGCAATTATTTTGATGGTCATTTTAGTGGTGAC
ATTAATAAGGACACATTTCAAAATATTCCTATGAATAATTTATCATCAGAGACTAATCAGAGTAATCACA
GTGAAACTCATTCTGTAGGTTCTATGGAGCACATCCAAGGAGAAAATGGCAGGAATGGTACAGGAGGAAG
TGGGGGAGATGGGAGAGAAACACTTCCTGAGAAAGCTCTGGAAATCTGTGCAGACGATTGGAGCAAAGGA
AATTTGTGTAATTCAATGGGAGAGAATATCGAACCTGTGAAAATTTTAGTGCCACAAAAGAGCTTATCAT
GTAAAGTGACCAGTAGTCACCCACGCCTTGAACCAGAGACTCTCAGTGATGGTCCTTGTAGCAGAACATC
AGATGTAATCCATAACAGATCTGGACGGCTTACAGCCTATGACTTAATTAGCAGTCGAGCAGTCAAGAAG
CCCATGTCAGCCAGTGCCCTGTTCATTCAAGACCACCGCACTCAGTTCCTCACAGAGAATCCCAAGACTG
GTTTGGAGGATGCGACAGAACAAATCAAAGCACGATGGGAGACACTGAGTGAAGAGGAAAAGCACAAATA
CGAGGAAAAGGCTAAAAAAGACTTGGAACGATACAATAACCAAATGAAGAAAGCTATTGAACAGGAGACA
CAAGTATCATTGAAAGACGGCAGGAAAAAAAGGGCCACCAGTTCGTGGGGCTGGACACAGAAACATAAGG
TGAAAGACTCATCTAATCAGCCAAAACTTGATGAGCTCTTTCAGTCCCAGAATGAAAAGAAGAAGAGTGA
AAATATTAAAATAACAGAGATTCCCTTTTCTATGGAAAACTTAAAAGCGAACTTGAAGAAACAAAAGGAA
GTTGACTTAGAGGAGAAGGATGAGATTTACCTGATCCACAGTCTCAAGTTTCCTGATTCGTGGCTGGTCA
CGTCCAGAGCCGATGTCATGTTACTGAACCCATACAGAGTGGAGGAAGCCCTGCTATTTAAAAGACTTCT
TGAGAATCATAAACTCCTTGCAGAACCACTGGAAAAGCCAATTATATTAACAGAGAGTCTTCTTAATGGG
TCTCATTATCTAGAGGTTTTATATAAAATGTCAACAGTTGAAGAAAGAGGCAGTGGATCAGCTTACCTGT
GTGACCCTCGTCTTACAGCAAATGGCTTCAAGATCAGATTGACACCAGGAGTTTCCAGTACTGAGAACTA
CTTGGAAATAGAAGGAATGGCTCAGTGTCTCCCATTCTATGGAATAATGGATTTAAAGGAAATTCTTAAT
GCTATAGTAAACAAAAATGCAAAGGAGATTTATGAATGTAGACCTCGAAAAGTAATAAATTATCTGGAGG
GAGAAGCCGTCCGTCTATCCAGACAGCTACCCATGTACTTACCAAGAGAGGATGTCCAAGATCTTATCTA
TAGAATGAAGCACCAGTTCGGAAAAGAAATTAAAGGCTGTGTTCATGGCCGCCCATTTTTTCATCATTTG
ACCCATCTTCCAGGAACTTCATGA

Translation (917 aa):
MKQLPAATVRLLSSSQTITSVVSVVKELIENSLDAGATSIEVKLENYGFDKIEIRDNGEGIKAVDVPVMA
VKYYTSKISSHEDLGNLTTYGFRGEALGSICNVAEVVVTTRTSADDFSTQYVLDGSGHILSQKPSHLGQG
TTVTALKLFKNLPVRKQFYSTAKKCKDELKNVQDLLISYGVLKPDVRITFVHNKAVIWQKSRVPDHRMAL
MSVLGTAVMGNMESVEQHCEQSQIYLSGFFPKHDADHNSTSLSTPERSFIFINSRPVHQKDILKLIRRYY
NLKCLKESTRLYPIFFLKIDVPSAEVDINLTPDKSQVLLQNKESVLIALENLMMTCYGPLPTTESSENNR
VDISSANMVVSQTAETDVLFNKMESFGNNYPNADTSAIHFQKDESRKNIDHHLNEQINIGNYFDGHFSGD
INKDTFQNIPMNNLSSETNQSNHSETHSVGSMEHIQGENGRNGTGGSGGDGRETLPEKALEICADDWSKG
NLCNSMGENIEPVKILVPQKSLSCKVTSSHPRLEPETLSDGPCSRTSDVIHNRSGRLTAYDLISSRAVKK
PMSASALFIQDHRTQFLTENPKTGLEDATEQIKARWETLSEEEKHKYEEKAKKDLERYNNQMKKAIEQET
QVSLKDGRKKRATSSWGWTQKHKVKDSSNQPKLDELFQSQNEKKKSENIKITEIPFSMENLKANLKKQKE
VDLEEKDEIYLIHSLKFPDSWLVTSRADVMLLNPYRVEEALLFKRLLENHKLLAEPLEKPIILTESLLNG
SHYLEVLYKMSTVEERGSGSAYLCDPRLTANGFKIRLTPGVSSTENYLEIEGMAQCLPFYGIMDLKEILN
AIVNKNAKEIYECRPRKVINYLEGEAVRLSRQLPMYLPREDVQDLIYRMKHQFGKEIKGCVHGRPFFHHL
THLPGTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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