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Report for CCDS39851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39851.1 Public Mus musculus 7 Zfp59 23 108 98 CCDS HistoryNCBI Gene:22717Re-query CCDS DB by CCDS ID:39851.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39851.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108331.2 ENSMUSP00000103968.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108331.2Link to Ensembl Protein Viewer:ENSMUSP00000103968.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108331Re-query CCDS DB by Protein ID:ENSMUSP00000103968
Original member Current member EBI ENSMUST00000205701.1 ENSMUSP00000145671.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205701.1Link to Ensembl Protein Viewer:ENSMUSP00000145671.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205701Re-query CCDS DB by Protein ID:ENSMUSP00000145671
Original member NCBI NM_011762.3 NP_035892.2 Updated not alive Link to Nucleotide Sequence:NM_011762.3Link to Protein Sequence:NP_035892.2Re-query CCDS DB by Nucleotide ID:NM_011762Re-query CCDS DB by Protein ID:NP_035892
Current member NCBI NM_011762.4 NP_035892.2 Accepted alive Link to Nucleotide Sequence:NM_011762.4Link to Protein Sequence:NP_035892.2Re-query CCDS DB by Nucleotide ID:NM_011762Re-query CCDS DB by Protein ID:NP_035892Link to BLAST:NP_035892.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035892.2 653 P16373 653 100% 0 0

Chromosomal Locations for CCDS 39851.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27842855 27842887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27844285 27844411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27846404 27846502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27853384 27855086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1962 nt):
ATGGCCAGCACTAATTCTCAAGACATGGTTTGTGGGTCAGTGACATTTAGGGATGTGGCTGTTGACTTCT
CTCAGGAGGAGTGGGCCTGCCTGGATGCTACTCAGAAGGTCTTATACAGGAACATAATGTTGGAGACCTA
CAGCAACCTGGTCGCAGTGGTGGGAAGTTGCATTTCCAAGCCAGATCTGATCGTCTTACTAGAGCAGGAG
AAAGAGCCCTGGATGGCTGTGAATGAAGAAACAGGCAGGCCGAGCCCAGATTTGGAGGCAGATTATGATG
CTGAAAATATATCCCCCCAAAATCGTATTTATAATAGAAAATTTTCCAAACAGAGCATAAAGCAATTAAG
TAGAACTTTTGACCCCAAGGGCTCCTGGTTTAGTAATGGCCCCAACTATAGTACATTCCATGGACTACGG
GATTGTCAGAGTGATGCTGGCCAACAGATTACTAACAAGGAAGGAGTGCCTCCTCACACCTGCCAGACTC
TTGCTCACAATACAGAAAAACCATATGAATGTAAAGAGTGTGGGAAGTGCTTTGGTTGCAGGTCAACTCT
TACTCAGCATCAGAGTGTTCACACTGGAGAGAAGCCCTATGAATGTAAGGAGTGTGGGAAGGCCTTCAGA
CTCCCCCAACAGCTCACAAGGCATCAGAAGTGTCACAGTGGTGAGAAGCCTTTCAGTCATAATGAAGGCA
GACAGGCTTTTCAACATCCCAACCTACTCAAGTACCCTAAAGCCATTCATACAGGTGCCAAAGCATTTGC
ATGCAGGGAATGTGGGAAGTCCTTCAACCGTGTCTCCAGCCTTGTTGAACATGGGCTTATTCATGCTGAT
GTGAAACCATATGAATGTAATGAGTGTGGGAAAGCCTTTAAACGACACAGAAGTTTTGTGCGCCATCAGA
AAATCCATTCTGGTGAGAGACCCTTTCAGTGTAAGGATTGTGGGAAGGGCTTCATTGTTCTGGCTCACCT
CACTCGGCACCAGAGCAGTCATAGTGAAGAGAAGCCATTTGAATGTGAGGAATGTGGCAAGAAATTTAGA
ACTGCCAGACACCTTGTTAAGCACCAGCGCATTCATAGCGGCGAGAAACCCTTTGAATGCAATGTATGTG
GGAGTGCTTTCCGGCTTCAACTATACCTTTCTGAGCATCAGAAAACTCACATGGAAGAGAAATACTTGGA
ATGCAATGTGTGTGGGAAGGCTTTTCGGCTTCAGGTATACCTTTCTGAGCATCTGAAAACTCACACTGAA
GAGAATCCTTTCAAGTGTAAGCTCTGTGGGTCAGCCTTCCCAAATAAGTACCAACTTAATAAGCATCTCA
CAGTTCACACTGATGGGAAACCCTATCAGTGCAAGGAATGTGGCAAATGCTTTCGTCAAAGGTCAAAACT
AACGGAACATGAGAGTATTCACACTGGCAAGAAACCCTTCCAGTGTGAAGAATGTGGGAAGTTCTTTAGA
CTTAACACACTTCTCATTCATCATCAGAAGTCTCACAGTGGTGAGAGACCTTTTGAATGTAAAGAATGCG
GAAAGGCTTTCCTTCTTCCCAGTCAACTTAATAGCCATAAAATTGTTCATACAAGTAAAAGACCCTTTGA
ATGCAAGGTATGTGGGAAGTCCTTCAAGCGTGAATCCAATCTCATTCAACATGGCGCTGTTCATGCTGGT
GTGAAATCATATGAATGCAGTGAGTGTGGGAAAGGTTTTATTCACCGCTCAAGCCTGTTCCACCATCGGA
AAATTCATTCTGATGAGAAACCATTTAAGTGTCAGGAGTGTGGAAAGGCCTTCGTTGTTCTGGCGTATCT
CATTCAGCATCAGAGCATCCACACTGGAGAGAAACCATTTGAATGTGAGCTGTGTGGGTCAGCCTTCAGA
TGTAGATCCCAACTCAATAAACATCTGAGAATTCATACTGATGTGAAACTCTTTCAGTGTGTGGAAGATT
GA

Translation (653 aa):
MASTNSQDMVCGSVTFRDVAVDFSQEEWACLDATQKVLYRNIMLETYSNLVAVVGSCISKPDLIVLLEQE
KEPWMAVNEETGRPSPDLEADYDAENISPQNRIYNRKFSKQSIKQLSRTFDPKGSWFSNGPNYSTFHGLR
DCQSDAGQQITNKEGVPPHTCQTLAHNTEKPYECKECGKCFGCRSTLTQHQSVHTGEKPYECKECGKAFR
LPQQLTRHQKCHSGEKPFSHNEGRQAFQHPNLLKYPKAIHTGAKAFACRECGKSFNRVSSLVEHGLIHAD
VKPYECNECGKAFKRHRSFVRHQKIHSGERPFQCKDCGKGFIVLAHLTRHQSSHSEEKPFECEECGKKFR
TARHLVKHQRIHSGEKPFECNVCGSAFRLQLYLSEHQKTHMEEKYLECNVCGKAFRLQVYLSEHLKTHTE
ENPFKCKLCGSAFPNKYQLNKHLTVHTDGKPYQCKECGKCFRQRSKLTEHESIHTGKKPFQCEECGKFFR
LNTLLIHHQKSHSGERPFECKECGKAFLLPSQLNSHKIVHTSKRPFECKVCGKSFKRESNLIQHGAVHAG
VKSYECSECGKGFIHRSSLFHHRKIHSDEKPFKCQECGKAFVVLAYLIQHQSIHTGEKPFECELCGSAFR
CRSQLNKHLRIHTDVKLFQCVED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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