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Report for CCDS19889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19889.1 Public Mus musculus 5 Kl 23 108 98 CCDS HistoryNCBI Gene:16591Re-query CCDS DB by CCDS ID:19889.1Re-query CCDS DB by GeneID:16591See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19889.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078856.7 ENSMUSP00000077899.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078856.7Link to Ensembl Protein Viewer:ENSMUSP00000077899.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078856Re-query CCDS DB by Protein ID:ENSMUSP00000077899
Original member Current member NCBI NM_013823.2 NP_038851.2 Accepted alive Link to Nucleotide Sequence:NM_013823.2Link to Protein Sequence:NP_038851.2Re-query CCDS DB by Nucleotide ID:NM_013823Re-query CCDS DB by Protein ID:NP_038851Link to BLAST:NP_038851.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038851.2 1014 O35082-1 1014 100% 0 0

Chromosomal Locations for CCDS 19889.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 150952717 150953541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150980610 150981120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150982503 150982771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150988393 150989494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150991517 150991854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3045 nt):
ATGCTAGCCCGCGCCCCTCCTCGCCGCCCGCCGCGGCTGGTGCTGCTCCGTTTGCTGTTGCTGCATCTGC
TGCTGCTCGCCCTGCGCGCCCGCTGCCTGAGCGCTGAGCCGGGTCAGGGCGCGCAGACCTGGGCTCGCTT
CGCGCGCGCTCCTGCCCCAGAGGCCGCTGGCCTCCTCCACGACACCTTCCCCGACGGTTTCCTCTGGGCG
GTAGGCAGCGCCGCCTATCAGACCGAGGGCGGCTGGCGACAGCACGGCAAAGGCGCGTCCATCTGGGACA
CTTTCACCCATCACTCTGGGGCGGCCCCGTCCGACTCCCCGATCGTCGTGGCGCCGTCGGGTGCCCCGTC
GCCTCCCCTGTCCTCCACTGGAGATGTGGCCAGCGATAGTTACAACAACGTCTACCGCGACACAGAGGGG
CTGCGCGAACTGGGGGTCACCCACTACCGCTTCTCCATATCGTGGGCGCGGGTGCTCCCCAATGGCACCG
CGGGCACTCCCAACCGCGAGGGGCTGCGCTACTACCGGCGGCTGCTGGAGCGGCTGCGGGAGCTGGGCGT
GCAGCCGGTGGTTACCCTGTACCATTGGGACCTGCCACAGCGCCTGCAGGACACCTATGGCGGATGGGCC
AATCGCGCCCTGGCCGACCATTTCAGGGATTATGCCGAGCTCTGCTTCCGCCACTTCGGTGGTCAGGTCA
AGTACTGGATCACCATTGACAACCCCTACGTGGTGGCCTGGCACGGGTATGCCACCGGGCGCCTGGCCCC
GGGCGTGAGGGGCAGCTCCAGGCTCGGGTACCTGGTTGCCCACAACCTACTTTTGGCTCATGCCAAAGTC
TGGCATCTCTACAACACCTCTTTCCGCCCCACACAGGGAGGCCGGGTGTCTATCGCCTTAAGCTCCCATT
GGATCAATCCTCGAAGAATGACTGACTATAATATCAGAGAATGCCAGAAGTCTCTTGACTTTGTGCTAGG
CTGGTTTGCCAAACCCATATTTATTGATGGCGACTACCCAGAGAGTATGAAGAACAACCTCTCGTCTCTT
CTGCCTGATTTTACTGAATCTGAGAAGAGGCTCATCAGAGGAACTGCTGACTTTTTTGCTCTCTCCTTCG
GACCAACCTTGAGCTTTCAGCTATTGGACCCTAACATGAAGTTCCGCCAATTGGAGTCTCCCAACCTGAG
GCAGCTTCTGTCTTGGATAGATCTGGAATATAACCACCCTCCAATATTTATTGTGGAAAATGGCTGGTTT
GTCTCGGGAACCACCAAAAGGGATGATGCCAAATATATGTATTATCTCAAGAAGTTCATAATGGAAACCT
TAAAAGCAATCAGACTGGATGGGGTCGACGTCATTGGGTACACCGCGTGGTCGCTCATGGACGGTTTCGA
GTGGCATAGGGGCTACAGCATCCGGCGAGGACTCTTCTACGTTGACTTTCTGAGTCAGGACAAGGAGCTG
TTGCCAAAGTCTTCGGCCTTGTTCTACCAAAAGCTGATAGAGGACAATGGCTTTCCTCCTTTACCTGAAA
ACCAGCCCCTTGAAGGGACATTTCCCTGTGACTTTGCTTGGGGAGTTGTTGACAACTACGTTCAAGTGGA
CACTACTCTCTCTCAGTTTACTGACCCGAATGTCTATCTGTGGGATGTGCATCACAGTAAGAGGCTTATT
AAAGTAGACGGGGTTGTAGCCAAGAAGAGAAAACCTTACTGTGTTGATTTCTCTGCCATCCGGCCTCAGA
TAACCTTACTTCGAGAAATGCGGGTCACCCACTTTCGCTTCTCCCTGGACTGGGCCCTGATCTTGCCTCT
GGGTAACCAGACCCAAGTGAACCACACGGTTCTGCACTTCTACCGCTGCATGATCAGCGAGCTGGTGCAC
GCCAACATCACTCCAGTGGTGGCCCTGTGGCAGCCAGCAGCCCCGCACCAAGGCCTGCCACATGCCCTTG
CAAAACATGGGGCCTGGGAGAACCCGCACACTGCTCTGGCGTTTGCAGACTACGCAAACCTGTGTTTTAA
AGAGTTGGGTCACTGGGTCAATCTCTGGATCACCATGAACGAGCCAAACACACGGAACATGACCTATCGT
GCCGGGCACCACCTCCTGAGAGCCCATGCCTTGGCTTGGCATCTGTACGATGACAAGTTTAGGGCGGCTC
AGAAAGGCAAAATATCCATCGCCTTGCAGGCTGACTGGATAGAACCGGCCTGCCCTTTCTCTCAAAATGA
CAAAGAAGTGGCCGAGAGAGTTTTGGAATTTGATATAGGCTGGCTGGCAGAGCCTATTTTTGGTTCCGGA
GATTATCCACGTGTGATGAGGGACTGGCTGAACCAAAAAAACAATTTTCTTTTGCCCTATTTCACCGAAG
ATGAAAAAAAGCTAGTCCGGGGTTCCTTTGACTTCCTGGCGGTGAGTCATTACACCACCATTCTGGTAGA
CTGGGAAAAGGAGGATCCGATGAAATACAACGATTACTTGGAGGTACAGGAGATGACTGACATCACATGG
CTCAACTCTCCCAGTCAGGTGGCAGTGGTGCCTTGGGGGCTGCGCAAAGTGCTCAACTGGCTAAGGTTCA
AGTACGGAGACCTCCCGATGTATGTGACAGCCAATGGAATCGATGATGACCCCCACGCCGAGCAAGACTC
ACTGAGGATCTATTATATTAAGAATTATGTGAATGAGGCTCTGAAAGCCTACGTGTTGGACGACATCAAC
CTTTGTGGCTACTTTGCGTATTCACTTAGTGATCGCTCAGCTCCCAAGTCTGGCTTTTATCGATATGCTG
CGAATCAGTTTGAGCCCAAACCATCTATGAAACATTACAGGAAAATTATTGACAGCAATGGCTTCCTGGG
TTCTGGAACACTGGGAAGGTTTTGTCCAGAAGAATACACTGTGTGCACCGAATGTGGATTTTTTCAAACC
CGGAAGTCTTTGCTGGTCTTCATCTCGTTTCTTGTTTTTACTTTTATTATTTCTCTTGCTCTCATTTTTC
ACTACTCCAAGAAAGGCCAGAGAAGTTATAAGTAA

Translation (1014 aa):
MLARAPPRRPPRLVLLRLLLLHLLLLALRARCLSAEPGQGAQTWARFARAPAPEAAGLLHDTFPDGFLWA
VGSAAYQTEGGWRQHGKGASIWDTFTHHSGAAPSDSPIVVAPSGAPSPPLSSTGDVASDSYNNVYRDTEG
LRELGVTHYRFSISWARVLPNGTAGTPNREGLRYYRRLLERLRELGVQPVVTLYHWDLPQRLQDTYGGWA
NRALADHFRDYAELCFRHFGGQVKYWITIDNPYVVAWHGYATGRLAPGVRGSSRLGYLVAHNLLLAHAKV
WHLYNTSFRPTQGGRVSIALSSHWINPRRMTDYNIRECQKSLDFVLGWFAKPIFIDGDYPESMKNNLSSL
LPDFTESEKRLIRGTADFFALSFGPTLSFQLLDPNMKFRQLESPNLRQLLSWIDLEYNHPPIFIVENGWF
VSGTTKRDDAKYMYYLKKFIMETLKAIRLDGVDVIGYTAWSLMDGFEWHRGYSIRRGLFYVDFLSQDKEL
LPKSSALFYQKLIEDNGFPPLPENQPLEGTFPCDFAWGVVDNYVQVDTTLSQFTDPNVYLWDVHHSKRLI
KVDGVVAKKRKPYCVDFSAIRPQITLLREMRVTHFRFSLDWALILPLGNQTQVNHTVLHFYRCMISELVH
ANITPVVALWQPAAPHQGLPHALAKHGAWENPHTALAFADYANLCFKELGHWVNLWITMNEPNTRNMTYR
AGHHLLRAHALAWHLYDDKFRAAQKGKISIALQADWIEPACPFSQNDKEVAERVLEFDIGWLAEPIFGSG
DYPRVMRDWLNQKNNFLLPYFTEDEKKLVRGSFDFLAVSHYTTILVDWEKEDPMKYNDYLEVQEMTDITW
LNSPSQVAVVPWGLRKVLNWLRFKYGDLPMYVTANGIDDDPHAEQDSLRIYYIKNYVNEALKAYVLDDIN
LCGYFAYSLSDRSAPKSGFYRYAANQFEPKPSMKHYRKIIDSNGFLGSGTLGRFCPEEYTVCTECGFFQT
RKSLLVFISFLVFTFIISLALIFHYSKKGQRSYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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