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Report for CCDS15156.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15156.1 Public Mus musculus 1 Rab17 23 108 98 CCDS HistoryNCBI Gene:19329Re-query CCDS DB by CCDS ID:15156.1Re-query CCDS DB by GeneID:19329See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15156.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027529.11 ENSMUSP00000027529.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027529.11Link to Ensembl Protein Viewer:ENSMUSP00000027529.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027529Re-query CCDS DB by Protein ID:ENSMUSP00000027529
Original member Current member EBI ENSMUST00000131428.7 ENSMUSP00000122178.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000131428.7Link to Ensembl Protein Viewer:ENSMUSP00000122178.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000131428Re-query CCDS DB by Protein ID:ENSMUSP00000122178
Original member Current member NCBI NM_001159725.2 NP_001153197.2 Accepted alive Link to Nucleotide Sequence:NM_001159725.2Link to Protein Sequence:NP_001153197.2Re-query CCDS DB by Nucleotide ID:NM_001159725Re-query CCDS DB by Protein ID:NP_001153197Link to BLAST:NP_001153197.2
Original member Current member NCBI NM_008998.4 NP_033024.1 Accepted alive Link to Nucleotide Sequence:NM_008998.4Link to Protein Sequence:NP_033024.1Re-query CCDS DB by Nucleotide ID:NM_008998Re-query CCDS DB by Protein ID:NP_033024Link to BLAST:NP_033024.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153197.2 214 P35292 214 100% 0 0
NP_033024.1 214 P35292 214 100% 0 0

Chromosomal Locations for CCDS 15156.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 90958884 90958999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 90959168 90959261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 90960002 90960127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 90961111 90961262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 90964144 90964300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGGCGCAGGCTGCTGGGCTGCCACAGGCCAGCACTGCTTCTGGCCAGCCCTACGTGAGCAAGCTGGTTC
TGCTTGGAAGCAGTTCTGTGGGCAAGACCAGCCTGGCCCTCCGGTACATGAAGCAGGACTTCAGCAATGT
CTTGCCGACTGTGGGGTGTGCCTTCTTCACAAAGGTGCTGGACTTGGGCTCCTCATCTCTGAAGCTTGAG
ATCTGGGACACAGCCGGCCAGGAGAAGTACCAAAGCGTCTGCCACCTCTACTTCAGGGGTGCCAATGCTG
CGCTCCTGGTTTATGACATCACTCGGAAGGATTCCTTTCACAAGGCCCAGCAGTGGCTGGAAGACCTGGA
GAAGGAATTCCAGCCAGGAGAGGTGGTGGTGATGCTGGTCGGCAACAAAACGGATCTGGGCGAGGAGCGG
GAAGTGACCTTCCAGGAAGGAAAAGAGTTTGCAGAGAGCAAAAGCTTGCTGTTCATGGAAACCTCCGCCA
AGCTGAACTACCAGGTGTCTGAGATCTTCAACACTGTTGCTCAGGAGCTTCTGCAGAGAGCAGGAGACAC
GGGGAGCAGCCGCCCACAGGAAGGTGAGGCTGTGGCTCTGAACCAGGAACCTCCCATCAGGCAGCGCCAG
TGCTGTGCACGATAG

Translation (214 aa):
MAQAAGLPQASTASGQPYVSKLVLLGSSSVGKTSLALRYMKQDFSNVLPTVGCAFFTKVLDLGSSSLKLE
IWDTAGQEKYQSVCHLYFRGANAALLVYDITRKDSFHKAQQWLEDLEKEFQPGEVVVMLVGNKTDLGEER
EVTFQEGKEFAESKSLLFMETSAKLNYQVSEIFNTVAQELLQRAGDTGSSRPQEGEAVALNQEPPIRQRQ
CCAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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