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Report for CCDS16905.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16905.1 Public Mus musculus 2 Xkr7 23 108 98 CCDS HistoryNCBI Gene:228787Re-query CCDS DB by CCDS ID:16905.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16905.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037235.6 ENSMUSP00000049346.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037235.6Link to Ensembl Protein Viewer:ENSMUSP00000049346.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000037235Re-query CCDS DB by Protein ID:ENSMUSP00000049346
Original member Current member NCBI NM_001011732.1 NP_001011732.1 Accepted alive Link to Nucleotide Sequence:NM_001011732.1Link to Protein Sequence:NP_001011732.1Re-query CCDS DB by Nucleotide ID:NM_001011732Re-query CCDS DB by Protein ID:NP_001011732Link to BLAST:NP_001011732.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001011732.1 580 Q5GH64 580 100% 0 0

Chromosomal Locations for CCDS 16905.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 153032015 153032598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153052714 153052916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153054015 153054970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1743 nt):
ATGGCCGCGAAGTCGGATGGAGCGGCGGCCGTGGCCGGCCCGGGGCCCGAGGGGCCGGCGGGAGCAGATC
GGGGCGGGGCGGGAGGGCGCGGGGAGGCTGCGGCGGGGATCGCGGGCCCGGGACCGGTGGAGGCGGGGTG
CCCGGGGCCACGCTACGAGCTGCGGGACTGCTGCTGGGTGCTGTGCGCGCTGCTCGTGTTCTTCTCCGAC
GGCGCCACCGACCTGTGGCTGGCGGCCTCCTACTACCTGCAGGGTCAGAGCACCTACTTCGGCCTCACCC
TGCTCTTCGTGCTGCTGCCCTCACTGGTCGTGCAGCTGCTCAGCTTCCGCTGGTTCGTCTACGACTACTC
GGAGCCCGCGGGGACCCCGGGACCCGCCGTCAGCACCAAGGACAGCGACATAGTCGGAGCCGCCATCAGC
ACCAAGGACAGTGCTGTCGCCTTCCGGACCAAAGAAGGTAGCGCGGAGCTGGTCCCCCGGCCCGCACCAT
CCTCGGCCGGCACCTACCGCCGCCGCTGCTGCCGCCTCTGCGTCTGGCTACTGCAGACCCTCGTTCACCT
CCTGCAACTCGGCCAGGTCTGGAGGTACCTGCGCGCCCTATACCTGGGACTGCAGAGCCGCTGGCGCGGG
GAGCGGCTGCGGCGCCACTTCTACTGGCAGATGCTGTTCGAGAGCGCGGATGTGAGCATGCTGCGTCTGC
TGGAGACCTTCCTGCGCAGCGCGCCGCAGCTGGTACTGCAGCTCAGCCTGCTGGTCCACCGCGGCCGAGA
GCCGGAACTGCTGACGGCTCTCTCCATCTCTGCCTCCCTTGTGTCCCTGGCCTGGACCCTGGCATCGTAC
CAGAAGGTGCTGAGAGACTCAAGAGATGACAAGCGGCCTCTGTCCTACAAGGGTGCTGTTGTCCAAGTGC
TGTGGCACCTGTTCACCATTGCGGCACGAACCCTGGCCTTTGCCCTCTTTGCCAGTGTCTACAAGCTCTA
CTTTGGCATTTTCATCGTCGCCCACTGGTGCATCATGACCTTCTGGGTCATCCAGGGCGAGACAGACTTC
TGCATGTCCAAGTGGGAGGAGATCATCTACAATATGGTGGTGGGTATCATCTACATCTTCTGCTGGTTCA
ATGTCAAGGAGGGCCGCAGCCGCCGTCGTGTGACCCTCTACTACTGCATCGTGCTGCTGGAGAACGCAGC
GCTCACTGGCTTCTGGTACTCCAGCCGCAATTTTTCCACTGACTTCTACTCGCTCATCCTGGTCTGCGTG
GTAGCCTCCAGCTTTGCCTTGGGCATATTCTTCATGTGTGTCTATTACTGTCTCTTGCACCCCAACGGCC
CCATGCTGGGTCCCCAGGCACCTGGCTGCATCTTCCCTGAAGCCCCAGGGCCTTGTGGCCCTCCAGCTGA
TGCCATCACAAGTCCGCCAAGGTCTCTGCCGAGGACTACAGGCACTGAGCGGGACGGGGTCGCAGTGGGA
GGTGAGCGAGCCGGGACCCCTACACTGCCTGTCTTCCAGGTGCGACCCGGTTTGCCTCCCACGCCAGTGG
CTCGCCCCTTGCGGACAGAGGGGCCTGTCATTCGGATTGACTTGCCTAGGAAAAAGTACCCAGCGTGGGA
TGCTCATTTTATTGACCGCCGGCTCCGGAAGACCATTCTGGCACTGGAGTATTCTTCGCCTGCCACACCC
CGGTTGCAGTACAGGAGCATGGGCACCTCCCAAGAGCTGCTGGAGTATGAGACCACAGTATAG

Translation (580 aa):
MAAKSDGAAAVAGPGPEGPAGADRGGAGGRGEAAAGIAGPGPVEAGCPGPRYELRDCCWVLCALLVFFSD
GATDLWLAASYYLQGQSTYFGLTLLFVLLPSLVVQLLSFRWFVYDYSEPAGTPGPAVSTKDSDIVGAAIS
TKDSAVAFRTKEGSAELVPRPAPSSAGTYRRRCCRLCVWLLQTLVHLLQLGQVWRYLRALYLGLQSRWRG
ERLRRHFYWQMLFESADVSMLRLLETFLRSAPQLVLQLSLLVHRGREPELLTALSISASLVSLAWTLASY
QKVLRDSRDDKRPLSYKGAVVQVLWHLFTIAARTLAFALFASVYKLYFGIFIVAHWCIMTFWVIQGETDF
CMSKWEEIIYNMVVGIIYIFCWFNVKEGRSRRRVTLYYCIVLLENAALTGFWYSSRNFSTDFYSLILVCV
VASSFALGIFFMCVYYCLLHPNGPMLGPQAPGCIFPEAPGPCGPPADAITSPPRSLPRTTGTERDGVAVG
GERAGTPTLPVFQVRPGLPPTPVARPLRTEGPVIRIDLPRKKYPAWDAHFIDRRLRKTILALEYSSPATP
RLQYRSMGTSQELLEYETTV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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