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Report for CCDS17210.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
17210.1 |
Public |
Mus musculus |
2 |
Zgpat |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:229007](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:17210.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 17210.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000029105.11 |
ENSMUSP00000029105.5 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000029105.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000029105.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000029105](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000029105](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000108807.8 |
ENSMUSP00000104435.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000108807.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000104435.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000108807](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000104435](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000116366.8 |
ENSMUSP00000112067.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000116366.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000112067.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000116366](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000112067](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001048148.1 |
NP_001041613.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001048148.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001041613.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001048148](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001041613](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001041613.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_144894.3 |
NP_659143.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_144894.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_659143.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_144894](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_659143](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_659143.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 17210.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1536 nt): ATGGACGAGGACAACCTAGAGACTGCCCTGCAGACCTACCGGGCCCAGCTGCAGCAGGTAGAGCTGGCGC TCGGTGCTGGCCTAGACGCTTCTGAGCAGGCGGACCTGCGTCAGCTGCAGGGCGATCTAAAGGAGCTGAT TGAGCTCACCGAGGCCAGCCTGTTGTCGGTCAGAAAGAGCAAGCTGCTGTCTACAGTGGACCAGGAGAGC CCAGCTCAAGAGGATGCTGAGTACCTGGCTTTCCAGAAGGCCATTGCGGAGGAAGTGGAAGCGCCCGGCG CCCCCTGCAATGACTCGGAGACGGCCCCTGGGAGCGAGGTGCAGCCGGGATCCACCTCCTCTGCACTGGA GGAGGAGGAGGAGGACCCAGATCTGGAGGAACTGAGCGGTGCTAAAGTGAATGCCCCCTACTACAGCGCT TGGGGCACGCTGGAGTATCACAACGCTATGGTAGTGGGCGCCGAAGAGGCGGAGGATGGTTCTGCGTGCG TCCGAGTCCTCTACCTATACCCTACCCACAAGTCCCTGAAGCCCTGTCCGTTCTTCCTGGAGGGAAAGTG CCGGTTCAAGGAGAACTGCAGGTTCTCCCATGGGCAGGTGGTATCTGTGGATGAGCTGCGTCCCTTTCAG GATCCAGACTTAAGCTTACTGCAGACTGGCTCTGCATGTCTGGCCAAGCACCAGGATGGCCTGTGGCACC CAGCACGGATCACTGATGTGGACAATGGCTACTATACCGTTAAGTTTGACTCATTGCTGCTGAAGGAGGC TGTAGTGGAGGGGGACAGCATCCTGCCTCCTCTGCGCACTGAGGCTACAGAGTCATCTGACTCAGACACT GGTGATGCAAGTGACTCCAGCTATGCCAGAGTGGTGGAACCAAGCACGGTGGACACTGGGACCTGCAGTT CTGCCTTTGCTGGCTGGGAGGTACACACACGGGGCATTGGCTCCAAACTCCTCGTCAAGATGGGCTATGA GTTTGGCAAGGGTTTGGGCCGGCATGCAGAAGGCCGGGTGGAGCCCATCCATGCTGTAGTGTTGCCTAGA GGGAAATCACTGGACCAGTGTGCAGAGATACTGCAGAAGAAGACAAAGCGAGGCCAGGCTGGGTCCAACA GGCCTCCAAAATGCCGGAGGAGTGGTAGTAGACCTGAGGGCCGCCCACCCCCCCGGAATGTGTTTGACTT TTTGAATGAAAAACTGCAAAGCCAGGTTCCTGGGACCCCAGATGCTGGGGTGGATACCCCAGAGAGAAGG AACAAAGACATGTATCACGCCAGCAAGAGCGCCAAGCAGGCTTTGAGCCTGCAGCTCTTCCAGACTGAGG AGAAGATTGAGCGGACCCAACGGGACATCCGGGGCATCCAGGAGGCCCTAACCCGGAACACTGGCCGGCA CAATATGACGACAGCCCATCTGCAGGAGAAGCTGGAGGGAGCCCAGCGGCAGCTGGGTCAGCTGCGTGCT CAGGAGGCTGACCTACAGAGGAAACAGCGGAAGGCAGACACTCACAGGAAGATGACAGAGTTCTAG
Translation (511 aa): MDEDNLETALQTYRAQLQQVELALGAGLDASEQADLRQLQGDLKELIELTEASLLSVRKSKLLSTVDQES PAQEDAEYLAFQKAIAEEVEAPGAPCNDSETAPGSEVQPGSTSSALEEEEEDPDLEELSGAKVNAPYYSA WGTLEYHNAMVVGAEEAEDGSACVRVLYLYPTHKSLKPCPFFLEGKCRFKENCRFSHGQVVSVDELRPFQ DPDLSLLQTGSACLAKHQDGLWHPARITDVDNGYYTVKFDSLLLKEAVVEGDSILPPLRTEATESSDSDT GDASDSSYARVVEPSTVDTGTCSSAFAGWEVHTRGIGSKLLVKMGYEFGKGLGRHAEGRVEPIHAVVLPR GKSLDQCAEILQKKTKRGQAGSNRPPKCRRSGSRPEGRPPPRNVFDFLNEKLQSQVPGTPDAGVDTPERR NKDMYHASKSAKQALSLQLFQTEEKIERTQRDIRGIQEALTRNTGRHNMTTAHLQEKLEGAQRQLGQLRA QEADLQRKQRKADTHRKMTEF
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