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Report for CCDS6817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6817.1 Public Homo sapiens 9 TRIM32 24 110 108 CCDS HistoryNCBI Gene:22954Re-query CCDS DB by CCDS ID:6817.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6817.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373983.2 ENSP00000363095.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373983.2Link to Ensembl Protein Viewer:ENSP00000363095.1Re-query CCDS DB by Nucleotide ID:ENST00000373983Re-query CCDS DB by Protein ID:ENSP00000363095
Original member Current member EBI ENST00000450136.2 ENSP00000408292.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000450136.2Link to Ensembl Protein Viewer:ENSP00000408292.1Re-query CCDS DB by Nucleotide ID:ENST00000450136Re-query CCDS DB by Protein ID:ENSP00000408292
Original member Current member NCBI NM_001099679.2 NP_001093149.1 Accepted alive Link to Nucleotide Sequence:NM_001099679.2Link to Protein Sequence:NP_001093149.1Re-query CCDS DB by Nucleotide ID:NM_001099679Re-query CCDS DB by Protein ID:NP_001093149Link to BLAST:NP_001093149.1
Original member Current member NCBI NM_001379048.1 NP_001365977.1 Accepted alive Link to Nucleotide Sequence:NM_001379048.1Link to Protein Sequence:NP_001365977.1Re-query CCDS DB by Nucleotide ID:NM_001379048Re-query CCDS DB by Protein ID:NP_001365977Link to BLAST:NP_001365977.1
Original member Current member NCBI NM_001379049.1 NP_001365978.1 Accepted alive Link to Nucleotide Sequence:NM_001379049.1Link to Protein Sequence:NP_001365978.1Re-query CCDS DB by Nucleotide ID:NM_001379049Re-query CCDS DB by Protein ID:NP_001365978Link to BLAST:NP_001365978.1
Original member Current member NCBI NM_001379050.1 NP_001365979.1 Accepted alive Link to Nucleotide Sequence:NM_001379050.1Link to Protein Sequence:NP_001365979.1Re-query CCDS DB by Nucleotide ID:NM_001379050Re-query CCDS DB by Protein ID:NP_001365979Link to BLAST:NP_001365979.1
Original member Current member NCBI NM_012210.4 NP_036342.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012210.4Link to Protein Sequence:NP_036342.2Re-query CCDS DB by Nucleotide ID:NM_012210Re-query CCDS DB by Protein ID:NP_036342Link to BLAST:NP_036342.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093149.1 653 Q13049 653 100% 0 0
NP_001365977.1 653 Q13049 653 100% 0 0
NP_001365978.1 653 Q13049 653 100% 0 0
NP_001365979.1 653 Q13049 653 100% 0 0
NP_036342.2 653 Q13049 653 100% 0 0

Chromosomal Locations for CCDS 6817.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 116697743 116699704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1962 nt):
ATGGCTGCAGCAGCAGCTTCTCACCTGAACCTGGATGCCCTCCGGGAAGTGCTAGAATGCCCCATCTGCA
TGGAGTCCTTCACAGAAGAGCAGCTGCGTCCCAAGCTTCTGCACTGTGGCCATACCATCTGCCGCCAGTG
CCTGGAGAAGCTATTGGCCAGTAGCATCAATGGTGTCCGCTGTCCCTTTTGCAGCAAGATTACCCGCATA
ACCAGCTTGACCCAGCTGACAGACAATCTGACAGTGCTAAAGATCATTGATACAGCTGGGCTCAGCGAGG
CTGTGGGGCTGCTCATGTGTCGGTCCTGTGGGCGGCGTCTGCCCCGGCAATTCTGCCGGAGCTGTGGTTT
GGTGTTATGTGAGCCCTGCCGGGAGGCAGACCATCAGCCTCCTGGCCACTGTACACTCCCTGTCAAAGAA
GCAGCTGAGGAGCGGCGTCGGGACTTTGGAGAGAAGTTAACTCGTCTGCGGGAACTTATGGGGGAGCTGC
AGCGGCGGAAGGCAGCCTTGGAAGGTGTCTCCAAGGACCTTCAGGCAAGGTATAAAGCAGTTCTCCAGGA
GTATGGGCATGAGGAGCGCAGGGTCCAGGATGAGCTGGCTCGCTCTCGGAAGTTCTTCACAGGCTCTTTG
GCTGAAGTTGAGAAGTCCAATAGTCAAGTGGTAGAGGAGCAGAGTTACCTGCTTAACATTGCAGAGGTGC
AGGCTGTGTCTCGCTGTGACTACTTCCTGGCCAAGATCAAGCAGGCAGATGTAGCACTACTGGAGGAGAC
AGCTGATGAGGAGGAGCCAGAGCTCACTGCCAGCTTGCCTCGGGAGCTCACCCTGCAAGATGTGGAGCTC
CTTAAGGTAGGTCATGTTGGCCCCCTCCAAATTGGACAAGCTGTTAAGAAGCCCCGGACAGTTAACGTGG
AAGATTCCTGGGCCATGGAGGCCACAGCGTCTGCTGCCTCTACCTCTGTTACTTTTAGAGAGATGGACAT
GAGCCCGGAGGAAGTGGTTGCCAGCCCTAGGGCCTCACCTGCTAAACAGCGGGGTCCTGAGGCAGCCTCC
AATATCCAGCAGTGCCTCTTTCTCAAGAAGATGGGGGCCAAAGGCAGCACTCCAGGAATGTTCAATCTTC
CAGTCAGTCTCTACGTGACCAGTCAAGGTGAAGTACTAGTCGCTGACCGTGGTAACTATCGTATACAAGT
CTTTACCCGCAAAGGCTTTTTGAAGGAAATCCGCCGCAGCCCCAGTGGCATTGATAGCTTTGTGCTAAGC
TTCCTTGGGGCAGATCTACCCAACCTCACTCCTCTCTCAGTGGCAATGAACTGCCAGGGGCTGATTGGTG
TGACTGACAGCTATGATAACTCCCTCAAGGTATATACCTTGGATGGCCACTGCGTGGCCTGTCACAGGAG
CCAGCTGAGCAAACCATGGGGTATCACAGCCTTGCCATCTGGCCAGTTTGTAGTAACCGATGTGGAAGGT
GGAAAGCTTTGGTGTTTCACAGTTGATCGAGGATCAGGGGTGGTCAAATACAGCTGCCTATGTAGTGCTG
TGCGGCCCAAATTTGTCACCTGTGATGCTGAGGGCACCGTCTACTTCACCCAGGGCTTAGGCCTCAATCT
GGAGAATCGGCAGAATGAGCACCACCTGGAGGGTGGCTTTTCCATTGGCTCTGTAGGCCCTGATGGGCAG
CTGGGTCGCCAGATTAGCCACTTCTTCTCGGAGAATGAGGATTTCCGCTGCATTGCTGGCATGTGTGTGG
ATGCTCGTGGTGATCTCATCGTGGCTGACAGTAGTCGCAAGGAAATTCTCCATTTTCCTAAGGGTGGGGG
CTATAGTGTCCTTATTCGAGAGGGACTTACCTGTCCGGTGGGCATAGCCCTAACTCCTAAGGGGCAGCTG
CTGGTCTTGGACTGTTGGGATCATTGCATCAAGATCTACAGCTACCATCTGAGAAGATATTCCACCCCAT
AG

Translation (653 aa):
MAAAAASHLNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI
TSLTQLTDNLTVLKIIDTAGLSEAVGLLMCRSCGRRLPRQFCRSCGLVLCEPCREADHQPPGHCTLPVKE
AAEERRRDFGEKLTRLRELMGELQRRKAALEGVSKDLQARYKAVLQEYGHEERRVQDELARSRKFFTGSL
AEVEKSNSQVVEEQSYLLNIAEVQAVSRCDYFLAKIKQADVALLEETADEEEPELTASLPRELTLQDVEL
LKVGHVGPLQIGQAVKKPRTVNVEDSWAMEATASAASTSVTFREMDMSPEEVVASPRASPAKQRGPEAAS
NIQQCLFLKKMGAKGSTPGMFNLPVSLYVTSQGEVLVADRGNYRIQVFTRKGFLKEIRRSPSGIDSFVLS
FLGADLPNLTPLSVAMNCQGLIGVTDSYDNSLKVYTLDGHCVACHRSQLSKPWGITALPSGQFVVTDVEG
GKLWCFTVDRGSGVVKYSCLCSAVRPKFVTCDAEGTVYFTQGLGLNLENRQNEHHLEGGFSIGSVGPDGQ
LGRQISHFFSENEDFRCIAGMCVDARGDLIVADSSRKEILHFPKGGGYSVLIREGLTCPVGIALTPKGQL
LVLDCWDHCIKIYSYHLRRYSTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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