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Report for CCDS83838.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83838.1 Public Mus musculus 11 Or1e31 23 108 98 CCDS HistoryNCBI Gene:258236Re-query CCDS DB by CCDS ID:83838.1Re-query CCDS DB by GeneID:258236See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83838.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000214485.2 ENSMUSP00000151029.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214485.2Link to Ensembl Protein Viewer:ENSMUSP00000151029.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214485Re-query CCDS DB by Protein ID:ENSMUSP00000151029
Original member Current member NCBI NM_001159775.1 NP_001153247.1 Accepted alive Link to Nucleotide Sequence:NM_001159775.1Link to Protein Sequence:NP_001153247.1Re-query CCDS DB by Nucleotide ID:NM_001159775Re-query CCDS DB by Protein ID:NP_001153247Link to BLAST:NP_001153247.1

Chromosomal Locations for CCDS 83838.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73798817 73799755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGATAATGAAAAACCAAACTGTCATCACACAGTTCCTCCTTCTGGGCCTGCCCATCCTGCCAGAACACC
AACACTTGTTCTATGCCTTGTTCCTGGCCATGTACCTCACCACTGCCCTGGGAAACCTGCTAATCATTGT
CCTTGTTCAACTGGACTCCCATCTCCACACACCCATGTACTTGTTTCTCAGCAACTTGTCCTTCTCTGAT
CTCTGCTTTTCCTCTGTCACAATGCCCAAATTGCTGCAGAATATACAGAGCCAGGACCCATCCATCCCCT
ATGCAGGCTGCCTGGCACAAACATACTTCTTTATGGTTTTTGGAGATATGGAGAGCTTCCTTCTTGTGGC
CATGGCCTATGACCGCTATGTGGCCATCTGCTTCCCTCTGCATTACACCAGCATCATGAGTCCCAAACTC
TGTGGTTGTCTAATGCTGCTATTGTGGATGCTAACAACATCCCATGCCATGATGCATACTCTCCTTGCAG
CAAGATTGTCTTTTTGTGAGAACAATGTGATCCTCAATTTTTTCTGTGACCTATTTGTTCTCCTAAAGCT
GGCTTGCTCAGACACTTATGTTAATGAGTTGATGATATTTATAATGAGTTCCCTCCTCATTGTTATTCCA
TTTTTCCTCATTGTCATGTCTTATGCAAGGATCATTGCCTCCATTCTTAAGGTTCCATCTATTCAAGGGA
TCTACAAGGTCTTCTCCACCTGTGGTTCCCATCTGTCTGTGGTGACCTTGTTTTATGGGACAATTATTGG
TCTCTACTTATGTCCATCAGGTAATAATTCCACAGTAAAGGGGACTGTCATGGCCATGATGTACACAGTG
GTGACTCCCATGCTGAACCCCTTCATCTATAGCCTGAGGAACAGAGACATGAAGAGGGCCCTAATAAGAG
TTATTTGCAGTAAGAAAATCTCTCTGTAA

Translation (312 aa):
MIMKNQTVITQFLLLGLPILPEHQHLFYALFLAMYLTTALGNLLIIVLVQLDSHLHTPMYLFLSNLSFSD
LCFSSVTMPKLLQNIQSQDPSIPYAGCLAQTYFFMVFGDMESFLLVAMAYDRYVAICFPLHYTSIMSPKL
CGCLMLLLWMLTTSHAMMHTLLAARLSFCENNVILNFFCDLFVLLKLACSDTYVNELMIFIMSSLLIVIP
FFLIVMSYARIIASILKVPSIQGIYKVFSTCGSHLSVVTLFYGTIIGLYLCPSGNNSTVKGTVMAMMYTV
VTPMLNPFIYSLRNRDMKRALIRVICSKKISL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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