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Report for CCDS19294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19294.1 Public Mus musculus 5 Tbc1d19 23 108 98 CCDS HistoryNCBI Gene:67249Re-query CCDS DB by CCDS ID:19294.1Re-query CCDS DB by GeneID:67249See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19294.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037337.9 ENSMUSP00000040585.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037337.9Link to Ensembl Protein Viewer:ENSMUSP00000040585.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000037337Re-query CCDS DB by Protein ID:ENSMUSP00000040585
Original member Current member NCBI NM_144517.4 NP_653100.1 Accepted alive Link to Nucleotide Sequence:NM_144517.4Link to Protein Sequence:NP_653100.1Re-query CCDS DB by Nucleotide ID:NM_144517Re-query CCDS DB by Protein ID:NP_653100Link to BLAST:NP_653100.1

Chromosomal Locations for CCDS 19294.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 53809760 53809858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53829350 53829422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53830455 53830500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53832970 53833045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53835172 53835246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53836596 53836659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53837924 53837970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53838127 53838237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53846201 53846273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53848162 53848200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53849838 53849950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53856848 53856922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53860144 53860206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53872253 53872337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53874887 53874931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53883662 53883694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53887354 53887463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53889316 53889407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53896991 53897106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53901577 53901647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 53903332 53903406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGTTGCAGGAGGAGTCGGACCTGTCCCTCATCATTGCCCAGATCGTCCAGAAACTCAAGGGCTCCAATT
TGTATGCTCAGCTGGAACGGCAGGCCTGGTCCTGTCTTCAGAGACCCGAGATCAGACTCGAATCACTCAA
AGAAGATATTAAGGAATTCTTTAAAATATCAGGTTGGGAGAAGAAACTTCAGAATGCTGTTTATAGTGAA
CTGAATGTGTTTCCTTTGCCAAGTCATCCTTCTGCACCCCCTGAGCATCTCAAAGAACCTTTGGTGTACA
TGAGGAAAGCACAGGGAAGCTGGGAAAAAAGAATCTTGAAGAGTTTAAATAGTATGTGCACAGAACTGAG
TATCCCACTAGCACGAAAGAGACCAGCTATGGAGCAGAAAGAGCTTCTCAATAAGTGGAATGAGATGGGA
ACGGATGAGCCAGATTTAAGCCTTTTTCGACCCGTTTATGCACCTAAGGACTTTCTTGAGGTATTAATTA
ATCTCCGCAACCCAAATTATGAAAATGGTGATTCTCTTAGTTTTAGGACTCATTTGGGTTTAATCCAAGT
TCCTCTGAAAGTAAAAGACATCCCTGAATTGAAAGAATGCTTTGTAGAACTTGGCTTAAACACAGGACAA
CTGGGAATAGATGATTCTACACAAGTGCCTCCTGAACTTTTTGAAAATGAACATGTGCGTATTGGGCAGA
AAGTTCTAGCGCAGCAGGACAGCGCTGCTGCTCAGCAGTACATCCGACAAGGAAGTCCCACAGCACTGAG
AGCTGAGCTCTGGGCGCTCATTCTGAATATCTCCAGTCAGCCTGAGGATATCCTGTATTATGAGCAGCTT
AAGACCAATGTGATCCAGCACGACCTTTTGGTGGACAGTCTCATTTATAAAGATGTGAAGCTGACAGCAA
GCAATGATGATTACTATTTTGTATTTGAAGATTATTTATATCAGGTGTTACTTTGCTTTTCACGGGATAC
GTCTGTACTGGGCCACTTTGCATACAACAGTGCTTCACCGCCGAAGTCATACATCAGAGGAAAACTAGGA
TTAGAAGAATATGCTGTTTTCTATCCGCCCAATGGTGTCATCCCTTTCCATGGGTTTTCCATGTATGTTG
CACCATTGTGTTTTCTGTATCATGAACCTTACAAATTGTATCAGATATTCCGTGAGATGTACGTCCGCTT
TTTCTTCAGACTCCACTCCATCTCCTCTCATCCTTCTGGTATTGTGTCACTCTGTTTGCTGTTTGAAACT
CTTCTTCAAACGTATCTTCCCCAACTCTTTTATCATCTGCGAGAAATTGGAGCTCAACCACTTCGGATAT
CATTTAAATGGATGGTTCGAGCTTTTTCTGGATACTTAGCTACAGATCAACTCTTGCTTTTATGGGATAG
AATTCTAGGATACAACTCTCTGGAAATACTTGCTGTGCTGGCAGCTGCCGTGTTTGCTTTCCGAGCAGTG
AACCTGATGGAGGTGACATCACTGGCTGCAGCTGAAGCAGTTCTGGCTGACCTTTCTACTTTAAAAGTCA
TGCCTCTTCTTCAAATTTTTCTGTTTGCTACCGTCACCTGA

Translation (526 aa):
MLQEESDLSLIIAQIVQKLKGSNLYAQLERQAWSCLQRPEIRLESLKEDIKEFFKISGWEKKLQNAVYSE
LNVFPLPSHPSAPPEHLKEPLVYMRKAQGSWEKRILKSLNSMCTELSIPLARKRPAMEQKELLNKWNEMG
TDEPDLSLFRPVYAPKDFLEVLINLRNPNYENGDSLSFRTHLGLIQVPLKVKDIPELKECFVELGLNTGQ
LGIDDSTQVPPELFENEHVRIGQKVLAQQDSAAAQQYIRQGSPTALRAELWALILNISSQPEDILYYEQL
KTNVIQHDLLVDSLIYKDVKLTASNDDYYFVFEDYLYQVLLCFSRDTSVLGHFAYNSASPPKSYIRGKLG
LEEYAVFYPPNGVIPFHGFSMYVAPLCFLYHEPYKLYQIFREMYVRFFFRLHSISSHPSGIVSLCLLFET
LLQTYLPQLFYHLREIGAQPLRISFKWMVRAFSGYLATDQLLLLWDRILGYNSLEILAVLAAAVFAFRAV
NLMEVTSLAAAEAVLADLSTLKVMPLLQIFLFATVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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