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Report for CCDS10987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10987.1 Public Homo sapiens 16 TCF25 24 110 108 CCDS HistoryNCBI Gene:22980Re-query CCDS DB by CCDS ID:10987.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10987.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263346.13 ENSP00000263346.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263346.13Link to Ensembl Protein Viewer:ENSP00000263346.8Re-query CCDS DB by Nucleotide ID:ENST00000263346Re-query CCDS DB by Protein ID:ENSP00000263346
Original member Current member EBI ENST00000640279.1 ENSP00000491638.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000640279.1Link to Ensembl Protein Viewer:ENSP00000491638.1Re-query CCDS DB by Nucleotide ID:ENST00000640279Re-query CCDS DB by Protein ID:ENSP00000491638
Original member Current member NCBI NM_014972.3 NP_055787.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014972.3Link to Protein Sequence:NP_055787.1Re-query CCDS DB by Nucleotide ID:NM_014972Re-query CCDS DB by Protein ID:NP_055787Link to BLAST:NP_055787.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055787.1 676 Q9BQ70 676 100% 0 0

Chromosomal Locations for CCDS 10987.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 89873668 89873859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89883351 89883512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89884582 89884656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89885848 89885966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89887652 89887717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89892193 89892275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89893728 89893858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89895038 89895137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89895990 89896083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89898557 89898649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89898767 89898872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89900635 89900794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89904118 89904205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89904938 89905096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89906194 89906284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89907243 89907322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89910591 89910663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89911080 89911238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2031 nt):
ATGTCGCGCCGGGCCCTCCGGAGGCTGAGGGGGGAACAGCGCGGCCAGGAGCCCCTCGGGCCCGGCGCCT
TGCATTTCGATCTCCGTGATGACGATGACGCGGAAGAAGAAGGGCCCAAGCGGGAGCTTGGTGTCCGGCG
TCCCGGGGGCGCAGGGAAGGAGGGCGTCCGAGTCAACAACCGCTTCGAGCTGATAAACATTGACGATCTT
GAGGATGACCCTGTGGTGAACGGGGAGAGGTCTGGCTGTGCGCTCACAGACGCTGTGGCACCAGGGAACA
AAGGAAGGGGTCAGCGTGGAAACACAGAGAGCAAGACGGATGGAGATGACACCGAGACAGTGCCCTCAGA
GCAGTCTCATGCAAGTGGCAAACTCCGGAAGAAGAAAAAAAAACAGAAAAACAAGAAAAGCAGCACGGGA
GAAGCATCGGAAAACGGACTAGAAGATATCGATCGCATCCTAGAGAGGATTGAGGACAGCACTGGGTTGA
ACCGTCCCGGCCCAGCTCCCCTGAGCTCCAGGAAGCACGTTCTCTACGTGGAGCACAGACACTTGAATCC
AGACACAGAACTGAAAAGGTATTTTGGTGCCCGGGCAATCCTGGGGGAGCAAAGGCCACGGCAGAGACAA
CGTGTGTACCCCAAGTGCACATGGCTGACCACCCCTAAAAGCACCTGGCCCCGCTACAGCAAACCAGGTC
TGTCCATGCGGCTGCTGGAATCAAAAAAAGGCCTCTCCTTCTTTGCGTTTGAGCACAGTGAGGAGTACCA
GCAGGCTCAGCACAAGTTCCTGGTGGCCGTGGAGTCTATGGAGCCGAACAACATCGTGGTTCTGCTCCAG
ACGAGCCCTTACCACGTTGACTCACTCCTGCAGCTCAGCGATGCCTGCCGCTTTCAAGAGGATCAGGAGA
TGGCTCGAGACCTCGTAGAGAGAGCGCTGTACAGCATGGAATGTGCGTTCCACCCCCTGTTCAGTCTCAC
CAGTGGGGCCTGCCGGCTGGATTACCGCAGACCCGAGAACAGGAGCTTCTACCTGGCCCTCTACAAGCAG
ATGAGCTTCCTGGAGAAGCGAGGCTGCCCGCGCACGGCGCTGGAGTACTGCAAGCTCATCCTGAGTCTCG
AGCCGGATGAGGACCCCCTCTGCATGCTGCTGCTCATCGACCACCTGGCCTTGCGGGCCCGGAACTACGA
GTACCTGATCCGCCTCTTCCAGGAGTGGGAGGCTCATCGGAACCTGTCCCAGCTCCCTAATTTTGCCTTC
TCTGTTCCACTGGCGTATTTCCTGCTGAGCCAGCAGACAGACCTCCCTGAGTGTGAGCAGAGCTCTGCCA
GGCAGAAGGCCTCTCTCCTGATACAGCAGGCGCTCACCATGTTCCCTGGAGTCCTCCTGCCCCTGCTCGA
GTCTTGCAGTGTGCGGCCCGACGCCAGCGTTTCCAGTCACCGCTTCTTTGGACCCAATGCTGAAATAAGC
CAGCCCCCTGCCCTGAGCCAGCTGGTGAACCTGTACCTTGGGAGGTCACACTTTCTCTGGAAAGAGCCCG
CCACCATGAGCTGGCTGGAGGAGAACGTCCACGAGGTTCTGCAAGCAGTGGACGCCGGGGACCCAGCCGT
GGAAGCCTGTGAGAACCGGCGGAAGGTGCTCTACCAGCGTGCACCCAGGAATATCCACCGCCATGTGATC
CTCTCTGAGATCAAGGAAGCCGTCGCTGCCCTGCCCCCGGACGTGACCACGCAGTCTGTGATGGGGTTTG
ATCCTCTGCCTCCTTCGGACACAATCTACTCCTACGTCAGGCCAGAGAGGCTAAGTCCTATCAGCCATGG
AAACACCATTGCTCTCTTCTTCCGGTCACTGTTGCCAAACTATACCATGGAGGGGGAGAGGCCCGAGGAA
GGAGTGGCTGGGGGTCTGAACCGCAACCAGGGCCTGAACAGGCTGATGCTGGCTGTGCGCGACATGATGG
CCAACTTCCACCTCAACGACCTGGAGGCGCCGCACGAGGACGACGCTGAGGGGGAGGGGGAGTGGGACTG
A

Translation (676 aa):
MSRRALRRLRGEQRGQEPLGPGALHFDLRDDDDAEEEGPKRELGVRRPGGAGKEGVRVNNRFELINIDDL
EDDPVVNGERSGCALTDAVAPGNKGRGQRGNTESKTDGDDTETVPSEQSHASGKLRKKKKKQKNKKSSTG
EASENGLEDIDRILERIEDSTGLNRPGPAPLSSRKHVLYVEHRHLNPDTELKRYFGARAILGEQRPRQRQ
RVYPKCTWLTTPKSTWPRYSKPGLSMRLLESKKGLSFFAFEHSEEYQQAQHKFLVAVESMEPNNIVVLLQ
TSPYHVDSLLQLSDACRFQEDQEMARDLVERALYSMECAFHPLFSLTSGACRLDYRRPENRSFYLALYKQ
MSFLEKRGCPRTALEYCKLILSLEPDEDPLCMLLLIDHLALRARNYEYLIRLFQEWEAHRNLSQLPNFAF
SVPLAYFLLSQQTDLPECEQSSARQKASLLIQQALTMFPGVLLPLLESCSVRPDASVSSHRFFGPNAEIS
QPPALSQLVNLYLGRSHFLWKEPATMSWLEENVHEVLQAVDAGDPAVEACENRRKVLYQRAPRNIHRHVI
LSEIKEAVAALPPDVTTQSVMGFDPLPPSDTIYSYVRPERLSPISHGNTIALFFRSLLPNYTMEGERPEE
GVAGGLNRNQGLNRLMLAVRDMMANFHLNDLEAPHEDDAEGEGEWD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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