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Report for CCDS41477.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41477.2 Public Homo sapiens 1 RBM34 24 110 108 CCDS HistoryNCBI Gene:23029Re-query CCDS DB by CCDS ID:41477.2See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 41477.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 41477.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000408888.8 ENSP00000386226.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000408888.8Link to Ensembl Protein Viewer:ENSP00000386226.3Re-query CCDS DB by Nucleotide ID:ENST00000408888Re-query CCDS DB by Protein ID:ENSP00000386226
Original member Current member NCBI NM_015014.4 NP_055829.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015014.4Link to Protein Sequence:NP_055829.2Re-query CCDS DB by Nucleotide ID:NM_015014Re-query CCDS DB by Protein ID:NP_055829Link to BLAST:NP_055829.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055829.2 430 P42696-1 430 100% 0 0

Chromosomal Locations for CCDS 41477.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 235131713 235131997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235135652 235135770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235136034 235136073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235137877 235137940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235138091 235138174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235148404 235148447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235152706 235152765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235154881 235155112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235160511 235160647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235160893 235161067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235161174 235161226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGGCCTTGGAAGGGATGAGCAAACGGAAGAGAAAGAGAAGTGTCCAGGAGGGAGAGAATCCTGACGACG
GCGTTCGCGGGAGTCCGCCGGAAGACTACAGGCTTGGACAGGTCGCCAGTAGCTTATTTCGCGGCGAACA
CCATTCCAGAGGTGGCACCGGTCGGCTGGCGTCCCTCTTCAGTTCTCTGGAGCCCCAGATTCAACCCGTG
TACGTGCCTGTGCCTAAACAAACCATCAAAAAAACGAAACGGAATGAGGAGGAAGAAAGTACATCCCAGA
TTGAAAGACCACTTTCGCAAGAACCTGCCAAAAAAGTGAAAGCGAAGAAGAAACACACTAACGCAGAAAA
AAAGTTGGCAGACAGGGAAAGCGCTCTAGCGAGTGCTGATTTAGAAGAAGAAATTCACCAGAAACAAGGG
CAGAAAAGGAAAAATTCTCAACCTGGTGTTAAAGTAGCAGATAGAAAAATACTTGATGACACAGAAGACA
CAGTTGTCAGTCAAAGAAAGAAAATTCAAATCAACCAAGAAGAAGAGAGATTAAAGAATGAGAGAACTGT
GTTTGTTGGGAATTTGCCTGTTACATGTAATAAGAAGAAGCTGAAGTCGTTTTTTAAAGAGTATGGACAA
ATAGAATCTGTACGATTTCGTTCTCTGATTCCAGCAGAGGGAACGCTATCCAAAAAGTTGGCAGCAATAA
AACGTAAAATTCATCCTGATCAGAAAAATATTAATGCCTATGTTGTGTTTAAGGAGGAGAGTGCTGCCAC
GCAAGCATTGAAAAGAAATGGGGCCCAGATTGCAGATGGATTTCGTATTAGAGTTGATCTCGCATCTGAG
ACCTCATCTAGAGACAAGAGATCGGTTTTTGTGGGGAATCTCCCTTATAAAGTTGAAGAATCTGCCATTG
AGAAGCACTTTCTGGACTGTGGAAGTATCATGGCCGTGAGGATTGTGAGAGACAAAATGACAGGCATCGG
CAAAGGGTTTGGCTATGTGCTCTTTGAGAATACAGATTCTGTTCATCTTGCTCTGAAATTAAATAATTCT
GAACTCATGGGGAGAAAACTCAGAGTCATGCGTTCTGTTAATAAAGAAAAATTTAAACAACAAAATTCAA
ATCCACGATTGAAGAATGTCAGTAAACCTAAGCAGGGACTTAATTTTACTTCCAAAACTGCAGAAGGACA
TCCTAAAAGCTTATTTATTGGAGAAAAAGCTGTTCTCCTTAAAACGAAGAAGAAAGGACAGAAGAAAAGT
GGACGCCCTAAGAAACAGAGAAAACAGAAATAA

Translation (430 aa):
MALEGMSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLFSSLEPQIQPV
YVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQG
QKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQ
IESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASE
TSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNS
ELMGRKLRVMRSVNKEKFKQQNSNPRLKNVSKPKQGLNFTSKTAEGHPKSLFIGEKAVLLKTKKKGQKKS
GRPKKQRKQK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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